From: A comparison of five methods for selecting tagging single-nucleotide polymorphisms
 |  | D2 Region | D4 Region | ||||
---|---|---|---|---|---|---|---|
Method | Sample | Median p-valuea [1st, 3rd quartile] | Estimated powerb (SE) | Mean # tagSNPs (SD) | Median p-valuea [1st, 3rd quartile] | Estimated powerb (SE) | Mean # tagSNPs (SD) |
Cousin | cases | 0.034 [0.0002, 0.0173] | 0.88 (0.033) | 16.5 (0.6) | 0.050 [0.0131, 0.1043] | 0.49 (0.051) | 20.2 (0.9) |
 | controls | 0.021 [0.0002, 0.0173] | 0.88 (0.033) | 16.6 (0.5) | 0.041 [0.0134, 0.1113] | 0.53 (0.050) | 20.7 (0.8) |
 | mixture | 0.033 [0.0002, 0.0176] | 0.87 (0.034) | 16.5 (0.6) | 0.040 [0.0125, 0.1124] | 0.55 (0.050) | 20.7 (0.7) |
Chapman-allelic | cases | 0.002 [0.0002, 0.0176] | 0.88 (0.033) | 16.9 (0.3) | 0.050 [0.0129, 0.2307] | 0.50 (0.050) | 20.0 (1.0) |
 | controls | 0.002 [0.0002, 0.0176] | 0.88 (0.033) | 16.8 (0.4) | 0.047 [0.0136, 0.1792] | 0.50 (0.050) | 20.8 (0.8) |
 | mixture | 0.002 [0.0002, 0.0176] | 0.88 (0.033) | 16.9 (0.4) | 0.041 [0.0135, 0.1261] | 0.52 (0.050) | 20.5 (0.9) |
Stram | cases | 0.013 [0.0032, 0.0505] | 0.73 (0.044) | 7.8 (0.6) | 0.042 [0.0101, 0.2754] | 0.53 (0.050) | 8.1 (1.0) |
 | controls | 0.003 [9 × 10-5, 0.0348] | 0.76 (0.043) | 7.9 (0.7) | 0.069 [0.0066, 0.2745] | 0.44 (0.050) | 8.0 (1.1) |
 | mixture | 0.008 [4 × 10-4, 0.0769] | 0.70 (0.046) | 7.7 (0.6) | 0.075 [0.0133, 0.2368] | 0.46 (0.050) | 7.9 (1.0) |
Zhaic (Stram) | cases | 0.039 [0.0126, 0.146] | 0.59 (0.049) | Â | 0.099 [0.0141, 0.2564] | 0.44 (0.050) | Â |
 | controls | 0.039 [0.0088, 0.1642] | 0.59 (0.049) |  | 0.080 [0.0132, 0.2562] | 0.46 (0.050) |  |
 | mixture | 0.037 [0.0112, 0.1538] | 0.58 (0.049) |  | 0.059 [0.0124, 0.2565] | 0.50 (0.050) |  |
Chapman-haplotypic | cases | 0.022 [0.0052, 0.1553] | 0.64 (0.048) | 6.9 (0.4) | 0.150 [0.0143, 0.5386] | 0.37 (0.048) | 7.6 (0.6) |
 | controls | 0.011 [0.0006, 0.1126] | 0.68 (0.047) | 6.8 (0.4) | 0.105 [0.0197, 0.3639] | 0.37 (0.048) | 7.5 (0.6) |
 | mixture | 0.016 [0.0014, 0.0970] | 0.66 (0.047) | 6.9 (0.5) | 0.115 [0.0152, 0.4258] | 0.41 (0.049) | 7.5 (0.6) |
Zhaid (Chapman haplotypic) | cases | 0.041 [0.0116, 0.1805] | 0.61 (0.049) | Â | 0.048 [0.0103, 0.2322] | 0.50 (0.050) | Â |
 | controls | 0.022 [0.0060, 0.1126] | 0.67 (0.047) |  | 0.055 [0.0108, 0.2196] | 0.49 (0.050) |  |
 | mixture | 0.037 [0.0086, 0.1620] | 0.62 (0.049) |  | 0.059 [0.0107, 0.2192] | 0.48 (0.050) |  |