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Table 1 Summarized results of GENEFINDER analysis

From: Comparison of significance level at the true location using two linkage approaches: LODPAL and GENEFINDER

  Replicate 1 Replicate 2 Replicate 3
  Without covariate With covariate Without covariate With covariate Without covariate With covariate
Chr LEA CIB LE CI LE CI LE CI LE CI LE CI
1 nC   192.4 (181.7, 203.1) 251.7 (237.3, 260.1) 248.5 (237.0, 260.0) 238.6 (221.5, 255.7) 245.1* (235.4, 254.7)
2 n   156 (141.8, 170.1) 227.9 (192.3, 263.6) 285.2 (275.5, 295.0) 216.3 (198.4, 234.1) 224.3* (215.4, 233.2)
3 n   31.1 (18.6, 43.6) 67.9 (52.9, 83.0) 199.5 (188.0, 211.0) 151.1 (115.5, 186.6) 150.2 (140.8, 159.7)
4 176.1 (158.3, 193.9) 196.7** (191.2, 202.3) 84.5 (65.7, 103.3) 92.7 (77.7, 107.6) 85.2 (76.5, 93.9) 86.4*** (81.7, 91.1)
5 75.2 (46.2, 104.2) 16.2* (9.3, 23.2) 83.6 (50.4, 116.8) 85 (72.7, 97.3) n   56.4 (49.3, 63.6)
6 46.2** (40.9, 51.5) 53.0* (48.3, 57.6) 94.1* (80.9, 107.2) 90.2*** (80.9, 99.5) 52.9 (42.4, 63.4) 50.7 (40.4, 61.1)
7 n   110.2 (94.3, 126.0) 69.2* (59.7, 78.6) 79.5* (72.6, 86.3) n   83.47 (71.6, 95.4)
8 n   142.2 (133.0, 51.3) 114.5 (92.1, 137.0) 114.4 (97.5, 131.3) 2 (0, 120.0) 54.65 (40.4, 68.9)
9 26.3 (14.4, 38.2) 24.7 (10.1, 39.2) 138.4* (128.1, 148.6) 138.1* (128.1. 148.0) 16.6 (2.5, 30.7) 22 (9.8, 34.3)
10 187.9 (175.4, 200.4) 151.4* (144.3, 158.6) 47.9 (35.9, 59.8) 49.2 (38.7, 59.7) n   173.9* (165.0, 182.9)
11 5.8 (0, 38.5) 38.1 (28.3, 48.0) 53.4 (33.3, 73.6) 57.5 (47.0, 68.0) n   52.7* (44.7, 60.7)
12 146.4 (120.0, 172.8) 72 (62.5, 81.5) n   69.7*** (63.35, 76.1) 79.4 (60.9, 97.8) 33.7* (24.0, 43.3)
13 63.1 (16.2, 100.0) 94.4 (84.2, 104.6) 87.5 (72.8, 102.2) 67 (58.1, 76.0) n   112.3 (99.1, 125.5)
14 118.2 (72.9, 163.6) 107.4*** (103.4, 111.4) n   79.4 (57.2, 101.7) n   106.9 (91.5, 122.3)
15 123 (105.0, 140.9) 112.1 (107.1, 117.2) n   82.8* (74.0, 91.6) 92.8 (54.7, 130.8) 104.3 (94.0, 114.5)
16 46.7 (27.1, 66.2) 48.1 (34.5, 61.7) 92.8 (63.1, 122.5) 120.1* (110.9, 129.2) 124.1 (0, 297.3) 116.7 (98.6, 134.8)
17 137.5 (115.2, 159.8) 134.5 (122.1, 146.9) 118.6 (97.9, 139.2) 80.4 (62.8, 97.9) n   57.6* (51.1, 64.1)
18 n   23.2 (11.5, 34.8) 25.1 (3.3, 46.8) 24.3 (3.5, 45.0) n   11.5** (5.7, 17.3)
19 n   72.0** (59.4, 84.7) 14.8 (0.1, 29.4) 29 (14.7, 43.2) D   68.4*** (63.2, 73.7)
20 56.5 (36.8, 76.3) 88.1 (80.5, 95.7) n   95.7 (73.3, 118.0) 36.2 (20.0, 52.3) 39.7* (32.0, 47.4)
21   47.9 (27.6, 68.2) n   38.9 (23.5, 54.3) n   42.1* (37.1, 47.2)
22   40 (25.9, 54.1) 17.7 (0, 66.5) 37.6** (33.2, 42.1) 38.9 (12.5, 65.3) 9.9 (0, 25.4)
  1. ALE, location estimate. BCI, 95% confidence interval. Cn, converge to the minimum not the maximum. D_, not convergent. *p-value < 0.05; **p-value < 0.005; ***p-value < 0.0005