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Table 1 Rice variety names, phenotype, and functional mutations at the Wx and OsC1 genes

From: Patterns of nucleotide diversity and phenotypes of two domestication related genes (OsC1 and Wx) in indigenous rice varieties in Northeast India

Variety Grain quality Wx5′ splice site WxCTn Apiculus color OsC110 bp deletion
Bas Beroin Glutinous T 17 Colored No
Til Bora Glutinous T 17 Colored No
Ranga Borah Glutinous G 11 Colorless Yes
Kakiberoin Glutinous G 11 Colorless Yes
Borua Beroin Glutinous T 17 Colorless No
Joha Non Glutinous G 18 Colored No
Bherapawa Non Glutinous G 17 Colored No
Lallatoi Non Glutinous G 11 Colored Yes
Kawanglawang Non Glutinous T 17 Colored No
Hati Hali Non Glutinous G 18 Colored No
Balam Non Glutinous G 11 Colored No
Bashful Non Glutinous G 10 Colorless No
Lahi Non Glutinous G 17 Colorless No
Borjahinga Non Glutinous G 11 Colorless No
Moircha Non Glutinous G 11 Colorless Yes
Aubalam Non Glutinous G 11 Colorless Yes
Papue Non Glutinous G 20 Colorless Yes
Sorpuma Non Glutinous G 10 Colorless Yes
Mimutim Non Glutinous G 18 Colorless Yes
Local Basmati Non Glutinous G 11 Colorless Yes
Arfa Non Glutinous G 11 Colorless Yes
Mulahail Non Glutinous G 10 Colorless Yes
Guaroi Non Glutinous G 17 Colorless Yes
Harinarayan Non Glutinous G 17 Colorless Yes
Ranjit Non Glutinous G 11 Colorless Yes
IR8 Non Glutinous G 11 Colorless Yes
Bahadur Non Glutinous G 11 Colorless Yes
Pankaj Non Glutinous G 12 Colorless Yes
Joya Non Glutinous G 11 Colorless Yes
O. rufipogon Non Glutinous G 7 Colored No
  1. Abbreviations: Wx waxy gene, CT n number of CT repeat.