Effect of advanced intercrossing on genome structure and on the power to detect linked quantitative trait loci in a multi-parent population: a simulation study in rice

Table 2 QTL conditions for the simulation of power to detect single QTL

		Allele frequency	Additive effect size								Location
			P1	P2	P3	P4	P5	P6	P7	P8	Chr	cM
Figure 4A		4:4	a	a	a	a	0	0	0	0	1	90
			*Values assigned to a are indicated on x-axis of Figure 4A.
Figure 4B	PVE = 0	4:4	0	0	0	0	0	0	0	0	1	90
		1:7	0	0	0	0	0	0	0	0	1	90
		3:2:3	0	0	0	0	0	0	0	0	1	90
		2:4:2	0	0	0	0	0	0	0	0	1	90
		2:2:2:2	0	0	0	0	0	0	0	0	1	90
		1:1:1:1:1:1:1:1	0	0	0	0	0	0	0	0	1	90
	PVE = 0.02	4:4	0.28	0.28	0.28	0.28	0	0	0	0	1	90
		1:7	0.43	0	0	0	0	0	0	0	1	90
		3:2:3	0.33	0.33	0.33	0.16	0.16	0	0	0	1	90
		2:4:2	0.4	0.4	0.2	0.2	0.2	0.2	0	0	1	90
		2:2:2:2	0.38	0.38	0.26	0.26	0.13	0.13	0	0	1	90
		1:1:1:1:1:1:1:1	0.43	0.37	0.31	0.25	0.19	0.12	0.06	0	1	90
	PVE = 0.04	4:4	0.41	0.41	0.41	0.41	0	0	0	0	1	90
		1:7	0.62	0	0	0	0	0	0	0	1	90
		3:2:3	0.47	0.47	0.47	0.24	0.24	0	0	0	1	90
		2:4:2	0.58	0.58	0.29	0.29	0.29	0.29	0	0	1	90
		2:2:2:2	0.55	0.55	0.36	0.36	0.18	0.18	0	0	1	90
		1:1:1:1:1:1:1:1	0.62	0.53	0.45	0.36	0.27	0.18	0.09	0	1	90
	PVE = 0.06	4:4	0.5	0.5	0.5	0.5	0	0	0	0	1	90
		1:7	0.76	0	0	0	0	0	0	0	1	90
		3:2:3	0.58	0.58	0.58	0.29	0.29	0	0	0	1	90
		2:4:2	0.71	0.71	0.36	0.36	0.36	0.36	0	0	1	90
		2:2:2:2	0.68	0.68	0.45	0.45	0.23	0.23	0	0	1	90
		1:1:1:1:1:1:1:1	0.77	0.66	0.55	0.44	0.33	0.22	0.11	0	1	90
Figure 4C	8-way AF 1/2	4:4	a	a	a	a	0	0	0	0	1	90
	8-way AF 1/8	1:7	a	0	0	0	0	0	0	0	1	90
	2-way n = 800	1:1	a	0	-	-	-	-	-	-	1	90
	2-way n = 200	1:1	a	0	-	-	-	-	-	-	1	90
			*Values assigned to a are indicated on x-axis of Figure 4C.
Figure 4D	8-way AF 1/2	4:4	0.53	0.53	0.53	0.53	0	0	0	0	1	90
	8-way AF 1/8	1:7	0.53	0	0	0	0	0	0	0	1	90
	2-way n = 800	1:1	0.53	0	-	-	-	-	-	-	1	90
	2-way n = 200	1:1	0.53	0	-	-	-	-	-	-	1	90

ISSN: 2730-6844