Table 2 Effect of the identified SNPs in PRKAG3 on protein sequence
From: A combination of two variants in PRKAG3is needed for a positive effect on meat quality in pigs
Reference | Position on chromosome 15, bp | Amino acid co-ordinate | Transcript | SIFTa |
|---|---|---|---|---|
K24E | 133801207 | 47 | ENSSSCT00000017641 | 0.16 |
K24E | 133801207 | 24 | ENSSSCT00000033825 | 0.01 |
T30N | 133802071 | 80 | ENSSSCT00000017641 | 0.44 |
T30N | 133802071 | 57 | ENSSSCT00000033825 | 0.20 |
T30N | 133802071 | 30 | ENSSSCT00000036402 | 0.32 |
I41V | 133802103 | 91 | ENSSSCT00000017641 | 0.05 |
I41V | 133802103 | 68 | ENSSSCT00000033825 | 0.07 |
I41V | 133802103 | 41 | ENSSSCT00000036402 | 0.03 |
G52S | 133802136 | 102 | ENSSSCT00000017641 | 0.11 |
G52S | 133802136 | 79 | ENSSSCT00000033825 | 0.13 |
G52S | 133802136 | 52 | ENSSSCT00000036402 | 0.13 |
L53P | 133802499 | 103 | ENSSSCT00000017641 | 0.04 |
L53P | 133802499 | 80 | ENSSSCT00000033825 | 0.05 |
L53P | 133802499 | 53 | ENSSSCT00000036402 | 0.07 |
K131R | 133802733 | 181 | ENSSSCT00000017641 | 1.00 |
K131R | 133802733 | 131 | ENSSSCT00000036402 | 1.00 |
K131R | 133802733 | 158 | ENSSSCT00000033825 | 1.00 |
P134L | 133802742 | 184 | ENSSSCT00000017641 | 0.58 |
P134L | 133802742 | 134 | ENSSSCT00000036402 | 0.58 |
P134L | 133802742 | 161 | ENSSSCT00000033825 | 0.58 |
I199V | 133803828 | 249 | ENSSSCT00000017641 | 1.00 |
I199V | 133803828 | 199 | ENSSSCT00000036402 | 1.00 |
I199V | 133803828 | 226 | ENSSSCT00000033825 | 1.00 |