Skip to main content

Table 11 SNPs [within genes] selected 1 for the multi-SNP models and goodness-of-fit by indicator

From: Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

Indicator SNPs RMSE2 MA3
  General association Breed-dependent association Diet-dependent association T V  
RFI rs109064731 rs108942504 [TMEM40] rs108942504 [TMEM40] 0.4324 0.4479 3.45%
  rs109551772 rs110576675 rs109116282    
  rs110922588 rs29024448 [RFC5] rs109452133    
  rs111010038 rs41568366 [CD3E] rs41585447    
  rs111012032 rs41659730 rs41660789    
  rs29012628 rs42456314 [GPC5] rs42169106    
  rs41588990 [CNOT6L]   rs42540326    
  rs41654149      
RADG rs108964818 [KDELC2] rs110280556 [UNC5C] rs41627953 0.0587 0.0686 14.35%
  rs108983714 rs41574319 rs41693645    
  rs109664122 rs41583989 [DTNA] rs42530614    
  rs109945988 rs41590616 [ABCA1] rs43474365 [SLC12A2]    
  rs109957444 [FAM135B] rs41600243     
  rs110732787 rs41854727     
  rs41565199      
  rs41664711      
  rs43557756      
RIG rs108964818 [KDELC2] rs41662450 rs29011654 0.5624 0.6796 17.24%
  rs109449042 rs41854727 rs41612502    
  rs110007573 [FER1L5] rs42198649 [SPTBN2] rs43687983    
  rs110522962      
  rs29012628      
  rs41591189 [G3BP2]      
  rs41654149      
  rs43557756      
EI rs109064731 rs108942504 [TMEM40] rs109198879 0.3131 0.3813 17.89%
  rs109709275 [GRAMD1B] rs110206384 [F8] rs109250591    
  rs110122189 rs110576675 rs42378531    
  rs110922588 rs41659730 rs43453950    
  rs111010038 rs41740922     
  rs41624569 rs42456314 [GPC5]     
  rs42332515      
EG rs108964818 [KDELC2] rs109880264 [GPD1] rs110237102 0.0491 0.0741 33.65%
  rs109945988 rs41650269 rs41611799    
  rs110222344 [WDFY4] rs42250803 [SLC7A11] rs43196644    
  rs110241960 rs42973170 rs43371919 [AGAP1]    
  rs41574883 rs43209887     
  rs41589654 [CNNM2]      
  rs41625303      
  rs41664218      
  rs42457639 [GPC5]      
  1. 1P-value < 0.0001.
  2. 2RMSE root means square error for the training (T) and validation (V) data sets.
  3. 3MA model adequacy = 100% * [1 − (RMSE T /RMSE V )].