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Table 3 Summary statistics of genomic and pedigree-based kinship estimation

From: Improved estimation of inbreeding and kinship in pigs using optimized SNP panels

 

Father-offspring

Full sibs

Half sibs

Pedigree 1

   

Mean ± SD

0.26 ± 0.01

0.27 ± 0.01

0.15 ± 0.01

Minimum

0.26

0.26

0.14

Maximum

0.33

0.34

0.24

All markers 2

   

Mean ± SD

0.23 ± 0.02

0.24 ± 0.04

0.12 ± 0.03

Minimum

0.17

0.08

0.02

Maximum

0.31

0.37

0.30

LE markers 3

   

Mean ± SD

0.23 ± 0.02

0.24 ± 0.04

0.11 ± 0.03

Minimum

0.18

0.08

0.02

Maximum

0.30

0.34

0.28

  1. Mean, standard deviation (SD), minimum and maximum values of genomic and pedigree-based kinship estimated within the pairs father-offspring (n = 645), full sibs (n = 502) and half sibs (n = 5,756).
  2. 1Analysis performed using information from 6–10 generations recorded on paper pedigree; 2Analysis performed using all markers (n = 28,740); 3Analysis performed using only markers in linkage equilibrium (LE) within each line (9579, 7984 and 10235 LE markers for L1, L2 and L3, respectively).
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BMC Genomic Data

ISSN: 2730-6844

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