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Table 6 Characteristics of the SSRs used in the present study

From: Peach genetic resources: diversity, population structure and linkage disequilibrium

Locus Ta1(°C) Linkage group2 Genetic position (cM)3 Physical position4 Fluorescent labelling5 References
UDP96-018 57 1 1 scaffold_1:1299253 FAM Cipriani et al., 1999 [42]
CPPCT027 55 1 23.1 scaffold_1:12409317 NED Aranzana et al., 2002 [32]
UDP96-005 57 1 29.2 scaffold_1:13903361 FAM Cipriani et al., 1999 [42]
EPDCU1090 57 1 32 scaffold_1:22653855 HEX Howad et al., 2005 [43]
CPPCT026 55 1 33.9 scaffold_1:31792505 FAM Aranzana et al., 2002a [32]
Pchgms3 60 1 37.5 scaffold_1:27692065 VIC Sosinski et al., 2000 [44]
BPPCT020 57 1 52.6 scaffold_1:33281268 HEX Dirlewanger et al., 2002 [30]
CPPCT042 57 1 62.5 scaffold_1:39307938 HEX Aranzana et al., 2002a [32]
CPPCT029 55 1 65.1 scaffold_1:40195426 HEX Aranzana et al., 2002a [32]
CPPCT044 58 2 7.2 scaffold_2:10280697 HEX Howad et al., 2005 [43]
UDP98-025 57 2 9.6 scaffold_2:10872102 HEX Cipriani et al., 1999 [42]
BPPCT001 57 2 20.9 scaffold_2:16134154 HEX Dirlewanger et al., 2002 [30]
UDP96-013 57 2 27.8 scaffold_2:18895940 FAM Cipriani et al., 1999 [42]
pchgms1 55 2 35.1 scaffold_2:21255607 FAM Sosinski et al., 2000 [44]
BPPCT024 57 2 36.3 scaffold_2:22674207 HEX Dirlewanger et al., 2002 [30]
PceGA34 50 2 43.9 scaffold_2:25199147 FAM Downey and Iezzoni., 2000 [45]
BPPCT007 57 3 11.2 scaffold_3:2741939 HEX Dirlewanger et al., 2002 [30]
BPPCT039 57 3 18 scaffold_3:5802709 NED Dirlewanger et al., 2002 [30]
CPPCT002 52 3 31.9 scaffold_3:16205250 NED Aranzana et al., 2002a [32]
UDP96-008 57 3 36.4 scaffold_3:16946762 FAM Cipriani et al., 1999 [42]
PTS1-SSR 53 4 5.2 scaffold_4:1414471 HEX Illa et al., 2011 [37]
UDP98-024 57 4 11.3 scaffold_4:3499623 FAM Testolin et al., 2000 [31]
CPPCT005 52 4 10.4 scaffold_4:10269880 FAM Aranzana et al., 2002a [32]
UDP96-003 57 4 28.3 scaffold_4:8757450 FAM Cipriani et al., 1999 [42]
BPPCT015 57 4 44 scaffold_4:12546880 NED Dirlewanger et al., 2002 [30]
CPPCT046 58 4 45.4 scaffold_4:14476745 HEX Aranzana et al., 2002a [32]
EPPCU1775 57 4 52 scaffold_4:22684553 HEX Howad et al., 2005 [43]
CPPCT040 57 5 1.5 scaffold_5:993617 HEX Aranzana et al., 2002a [32]
UDP97-401 57 5 11 scaffold_5:5940392 HEX Cipriani et al., 1999 [42]
BPPCT017 57 5 20.1 scaffold_5:11174442 HEX Dirlewanger et al., 2002 [30]
BPPCT037 57 5 25.6 scaffold_5:12312049 FAM Dirlewanger et al., 2002 [30]
BPPCT038 57 5 32.9 scaffold_5:14658198 NED Dirlewanger et al., 2002 [30]
PCeGA25 58 5 28.4 scaffold_5:12835942 FAM Downey and Iezzoni., 2000 [45]
CPPCT013 59 5 29.2 scaffold_5:12835904 FAM Aranzana et al., 2002a [32]
CPSCT006 62 5 21.7 scaffold_5:11533644 FAM Mnejja et al., 2004 [46]
BPPCT014 57 5 44 scaffold_5:16626108 FAM Dirlewanger et al., 2002 [30]
UDP96-001 57 6 17.5 scaffold_6:7040757 VIC Cipriani et al., 1999 [42]
CPPCT015 50 6 35.8 scaffold_6:16352480 PET Aranzana et al., 2002a [32]
pchcms5 57 6 44.7 scaffold_6:19166654 FAM Sosinski et al., 2000 [44]
BPPCT025 57 6 56.4 scaffold_6:21129947 FAM Dirlewanger et al., 2002 [30]
CPPCT030 50 6 80.2 scaffold_6:26851012 FAM Aranzana et al., 2002a [32]
CPPCT022 50 7 18.6 scaffold_7:10225365 FAM Aranzana et al., 2002a [32]
pchgms6 58 7 19.4 scaffold_7:10439493 HEX Aranzana et al., 2002a [32]
CPPCT033 50 7 38.9 scaffold_7:16702195 FAM Aranzana et al., 2002a [32]
PMS02 55 7 47.8 scaffold_7:18106236 PET Cantini et al., 2001 [47]
BPPCT006 57 8 14.1 scaffold_8:5982783 FAM Dirlewanger et al., 2002 [30]
CPPCT006 59 8 24.8 scaffold_8:13659021 FAM Aranzana et al., 2002a [30]
UDP98-409 57 8 44.5 scaffold_8:17783528 FAM Cipriani et al., 1999 [42]
  1. Note: 1: indicates annealing temperatures.
  2. 2: indicates linkage group information.
  3. 3: position of the SSR markers in the T × E linkage map.
  4. 4: physical position of the SSR markers in the peach genome sequence v1.0 (http://www.rosaceae.org/peach/genome).
  5. 5: fluorescent labeled dye added to the forward primer.