Skip to main content

Table 1 List of SNPs tested for LD with the BTNL8*3 deletion CNV

From: A common 56-kilobase deletion in a primate-specific segmental duplication creates a novel butyrophilin-like protein

    ASW   CEU   CHB   CHD   GHI   JPT   LWK   MKK   MEX   TSI   YRI  
rs Number Position Distance to deletion breakpoints D' r2 D' r2 D' r2 D' r2 D' r2 D' r2 D' r2 D' r2 D' r2 D' r2 D' r2
rs1904435 180322735 52,292      0.94 0.834 1 0.77 0.81 0.596 1 0.829 0.31 0.03    0.93 0.537 0.8 0.495 0.69 0.099
rs7735361 180329359 45,668 1 0.086 0.91 0.843 1 0.658 1 0.706 0.94 0.663 1 0.796 0.3 0.034 0.37 0 0.82 0.58 0.8 0.54 0.03 0
rs17704291 180336849 38,178 0.8 0.43 1 0.96 0.94 0.889 - - - - 1 1 0.28 0.04    0.94 0.76 0.9 0.68 0.3 0.06
rs4700772 180341845 33,182 0.8 0.539 1 1 1 1 1 0.966 1 0.946 1 1 0.8 0.25 0.63 0.322 1 0.952 1 0.752 0.8 0.3
rs2387715 180361266 13,761 0.8 0.694 1 1 1 1 1 0.966 1 0.944 1 1 0.8 0.237 0.63 0.322 1 0.952 1 0.749 0.8 0.33
rs3733755 180374484 543 1 0.686 1 0.815 1 0.692 1 0.451 1 0.588 1 0.486 1 0.31 0.77 0.195 1 0.86 1 0.598 1 0.38
deletion 180375027-180430596                        
rs10063135 180432024 1,428 1 0.177 1 0.923 1 0.946 1 0.966 1 0.545 1 0.754 0.4 0.161 0.8 0.101 1 0.82 0.97 0.81 0.8 0.09
rs4700774 180434216 3,620 1 0.473 1 1 1 0.945 1 0.966 1 0.893 1 1 0.84 0.12 0.5 0.09 0.95 0.903 1 0.752 0.2 0.07
rs7721042 180439488 8,892    1 0.958 1 0.939 - - - - 1 1 - -      - - 0.03 0
rs11249756 180455372 24,776 1 0.473 1 0.923 1 0.945 0.96 0.86 0.8 0.64 1 1 0.4 0.161 0.44 0.07 0.94 0.807 0.94 0.72 0.2 0.07
rs4701016 180458539 27,943 1 0.686 0.91 0.733 1 0.646 0.86 0.37 0.6 0.3 1 0.486 1 0.364 0.2 0.01 0.85 0.719 0.9 0.55 1 0.3
rs6868418 180458813 28,217 1 0.686 0.91 0.733 1 0.646 0.86 0.4 0.6 0.3 1 0.486 1 0.364 - - - - - - 1 0.3
  1. HapMap phase III populations were screened for tagging SNPs for the BTNL8_BTNL3-del allele. Several SNPs could be identified in Eastern Asian (CHB, CHD and JPT), American (GIH and MEX) and CEU population. However, no LD could be observed in African population (ASW, LKW, MKK and YRI) and only a weak association for rs10063135 could be detected in TSI population.
  2. r2 higher than0.8 indicates a significant correlation. ASW, individuals with African ancestry from Southwest USA; CEU, individuals from Utah with northern and western European ancestry; CHB, Han Chinese from Bejing; CHD, Han Chinese from Denver, Colorado; GIH, Gujarati Indians from Houston, Texas; JPT, Japanese from Tokyo; LWK, Luhya from Webuya, Kenya; MEK, individuals with Mexican ancestry from Los Angeles, California; MKK, Maasai from Kinyawa, Kenya; TSI, Toscans from Italy; YRI, Yorubas from Ibadan, Nigeria.