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Table 3 Number of recombination events calculated by different methods

From: Evolutionary history of black grouse major histocompatibility complex class IIB genes revealed through single locus sequence-based genotyping

Locus

No. of sequences

RM

RDP

GENECONV

Maxchi

Chimera

GARD

ρ

θ

ρ/θ

BLB1125

6

4

0

0

2

1

2

5.45

12.26

0.44

BLB2125

7

3

0

0

1

0

1

4.02

7.76

0.52

BLB2251

9

6

0

1

1

1

0

1.37

13.61

0.10

BLB1&2125

12

6

0

0

2

1

1

11.42

9.27

1.23

  1. RM, RDP, GENECONV, Maxchi, Chimaera and number of recombination breakpoints calculated GARD. Recombination rate (ρ), mutation rate (θ) and the ratio (ρ/θ) were calculated using LDhat.
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BMC Genomic Data

ISSN: 2730-6844

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