Table 3 Positions, confidence intervals and additive effects of detected significant QTL at the genome-wide level (q-value < 0.10)
Trait | SSC | Position cM (CI) | a (SE) | P-value |
|---|---|---|---|---|
Whole-population | ||||
BFT75 | 4 | 104 (102-109) | 0.901 (0.20) | 8.4 x 10-6 |
|  | 11 | 26 (25-27) | −0.657 (0.19) | 5.7 x 10-4 |
| Â | 17 | 58 (56-60) | 0.602 (0.19) | 1.0 x 10-3 |
SW | 1 | 104 (102-104) | −0.221 (0.07) | 1.0 x 10-3 |
|  | 4 | 60 (57-62) | −0.316 (0.07) | 9.2 x 10-6 |
BLW | 4 | 53 (50-54) | −0.300 (0.07) | 6.0 x 10-5 |
BC1 generation | ||||
BFT75 | 4 | 104 (102-109) | 1.16 (0.23) | 1.0 x 10-6 |
|  | 11 | 26 (25-27) | −0.86 (0.22) | 1.8 x 10-4 |
| Â | 14 | 112.5 (111-113) | 0.70 (0.22) | 2.0 x 10-3 |
| Â | 17 | 59 (56-61) | 0.74 (0.23) | 1.9 x 10-3 |
F3 + BC2 generations | ||||
BFTS | 4 | 82 (72-91) | 0.24 (0.08) | 3.0 x 10-3 |
| Â | 5 | 73 (71-88) | 0.31 (0.09) | 9.6 x 10-4 |
| Â | 6 | 123 (121-125) | 0.32 (0.09) | 3.9 x 10-4 |
| Â | 14 | 110 (109-113) | 0.38 (0.11) | 7.4 x 10-4 |
SW | 2 | 114 (112-116) | 0.45 (0.11) | 2.8 x 10-4 |
|  | 4 | 61 (60-64) | −0.35 (0.08) | 1.0 x 10-5 |
|  | 6 | 135 (134-136) | −0.34 (0.11) | 2.0 x 10-3 |
|  | 9 | 111 (106-113) | −0.23 (0.08) | 2.7 x 10-3 |
|  | 13 | 49 (47-53) | −0.28 (0.09) | 3.0 x 10-3 |
BLW | 2 | 116 (114-117) | 0.74 (0.16) | 1.3 x 10-5 |