Algorithm | Type | Input | Output | Mouse run Time (traits) | Mouse run time (genes) | Yeast run time | Automated steps |
---|---|---|---|---|---|---|---|
GFlasso [13] | SAM | G, P, Ep | G-P association | 0 05:05:50 | 1 16:17:45 | 2 06:43:56 | 17 |
MPGL [11] | SAM | G, P, Pop | G-P association | 2 09:07:47 | - | 3 11:09:46 | 3 |
TreeLasso [10] | SAM | G, P, Ep | G-P association | 0 01:12:03 | 0 12:53:52 | 0 05:08:42 | 15 |
AMTL [12] | SAM | G, P, Fg | G-P association | - | - | 1 20:35:47 | 8 |
gGFlasso [14] | SAM | T, Et, P, Ep, G/T assoc | T-P association | N/A | 0 01:54:04 | N/A | 19 |
Wald Test [15] | AM | G, P | G-P association | 0 00:23:29 | 0 09:51:23 | 0 00:54:04 | 5 |
Wilcoxon Sum-rank test [8] | AM | G, P | G-P association | 0 00:10:21 | 0 01:05:51 | 0 00:14:32 | 4 |
Lasso [16] | AM | G, P | G-P association | 0 00:59:21 | 0 08:22:42 | 0 04:07:53 | 6 |
association by population [17] | AM | G, P, Pop | G-P association | 0 00:57:24 | 2 19:02:46 | 1 03:00:44 | 5 |
Correlation | network | P | Ep | 0 00:01:50 | 0 00:06:05 | 0 00:09:29 | 3 |
Glasso [18] | network | P | Ep | 0 00:07:31 | 0 01:19:37 | 0 01:51:24 | 10 |
Scale-free network [19] | network | P | Ep | 0 00:03:11 | 0 00:41:23 | 0 00:41:08 | 6 |
Hierarchical clustering | tree | P | tree | 0 00:43:32 | 0 01:27:32 | 0 01:05:04 | 3 |
Structure [20] | population | G | Pop | 0 13:30:32 | 0 13:30:32 | 0 00:41:54 | 4 |
Gene module discovery [8] | Network analysis | Ep | phenotype clusters | N/A | 0 12:29:24 | 0 01:03:22 | 4 |