Figure 5
From: Empirical evaluations of analytical issues arising from predicting HLA alleles using multiple SNPs
Comparison of prediction accuracies between ethnic-specific model and multi-ethnic model. Building predictive models using both observed and imputed HapMap SNPs of multi-ethnicity or Caucasian only samples from the STEP cohort, the prediction accuracies for Caucasian/Mestizo/other ethnicities are shown in each panel. The size of the validation set is shown below each panel. Both the STEP and WTCCC cohort were genotyped on Illumina 1.2M. The confidence threshold was set at CT = 0.