Table 3 Similarity of CNVs detected between programs using HapMap data
From: Comparative analysis of copy number variation detection methods and database construction
| Programs | PennCNV | Birdseye (part of Birdsuite) Birdsuite | DNAcopy | CGHseg |
|---|---|---|---|---|
|
PennCNV [12417/6895] | - |
55.1/62.2* (56.4/61.9) |
62.5/75.2 (63.1/76.7) | 49.2/63.5 (51.5/65.3) |
|
23.2/26.8 (23.8/26.9) | ||||
|
Birdseye (part of Birdsuite) [14794/10102] |
62.2/69.8 (82.8/88.5) | - |
57.5/68.4 (69.8/82.6) |
40.7/52.4 (49.1/61.6) |
|
Birdsuite [56476/44150] |
68.0/74.3 (90.3/93.3) |
68.8/73.9 (84.5/89.4) |
47.0/54.4 (57.5/63.3) | |
|
DNAcopy [6748/4849] |
37.7/40.8 (50.7/53.8) |
29.6/31.8 (38.0/40.4) | - |
61.1/68.6 (62.1/68.6) |
|
13.8/15.0 (16.4/17.7) | ||||
|
CGHseg [3648/2401] |
13.8/17.4 (17.1/20.9) |
10.1/12.3 (11.6/13.9) |
32.1/35.6 (27.4/32.0) | - |
|
4.2/5.2 (4.6/5.6) |
