Figure 4

Linkage disequilibrium plot for the region between 36.9 Mb and 39.7 Mb on SSC6. All 31 significant SNPs (p ≤ 0.05 after FDR) and intervening SNPs for all animals (N = 943) are shown (A). The values in the boxes are pair wise SNP correlations (r²) and the box colour reflects the degree of correlation. B Haplotypes with all SNPs from the LD block are shown. Each line represents a haplotype and the frequency of the haplotype in this population is given at the end of the line. Haplotypes with a frequency below 2% are not included. Two SNPs are tagged and the SNP names are given in C.