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Figure 1 | BMC Genetics

Figure 1

From: Fine-scale detection of population-specific linkage disequilibrium using haplotype entropy in the human genome

Figure 1

Plots for S and I along model chromosomes. (A-C) Model chromosomes having a gradient recombination rate were created and scanned for haplotype entropy (S) with window size of 5, 21 and 51 loci. x-axis represents locus position and y-axis represents magnitude of S. (D-F) The same chromosomes were scanned for integrated EHH (I). Because I is used in log-scale to give XP-EHH, log-transformed I was plotted. SNPs with MAF < 0.05 are indicated in gray.

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