Table 1 Overview of data files/data sets

Data file 1

Summary of sequencing sample and strategies in this study

MS Word fle(.docx)

figshare(https://doi.org/10.6084/m9.figshare.19314470) [29]

Data file 2

Statistic of ONT-sequencing in this study

MS Word fle(.docx)

figshare(https://doi.org/10.6084/m9.figshare.19314515) [30]

Data file 3

Read number and length distribution of FLNC and Collapse transcripts after ONT-Seq analysis

MS Word fle(.docx)

figshare(https://doi.org/10.6084/m9.figshare.19314524) [31]

Data file 4

Gene information and database annotations

MS Excel file(.xls)

figshare(https://doi.org/10.6084/m9.figshare.19314536) [32]

Data file 5

The total number of AS events in detected genes and transcripts

MS Word fle(.docx)

figshare(https://doi.org/10.6084/m9.figshare.19314539) [33]

Data file 6

The characteristics of AS events in each sample

MS Excel file(.xls)

figshare(https://doi.org/10.6084/m9.figshare.19314545) [34]

Data file 7

The statistical lists of APA events for each sample

MS Excel file(.xls)

figshare(https://doi.org/10.6084/m9.figshare.19314548) [35]

Data file 8

The statistical list of all fusion gene for each sample

MS Excel file(.xls)

figshare(https://doi.org/10.6084/m9.figshare.19314563) [36]

Data file 9

The result of LncRNAs classifications

Portable Document Format file (.pdf)

figshare(https://doi.org/10.6084/m9.figshare.19314566) [37]

Data file 10

The information of target genes of these 933 lncRNAs

MS Excel file(.xls)

figshare(https://doi.org/10.6084/m9.figshare.19314569) [38]

Data file 11

The quantitative gene expression of all DEGs

MS Excel file(.xls)

figshare(https://doi.org/10.6084/m9.figshare.19314572) [39]

Data file 12

The quantitative gene expression of all DETs

MS Excel file(.xls)

figshare(https://doi.org/10.6084/m9.figshare.19314584) [40]

Data set 1

Nanopore sequencing reads of T01

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918124) [41]

Data set 2

Nanopore sequencing reads of T02

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918123) [42]

Data set 3

Nanopore sequencing reads of T03

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918114) [43]

Data set 4

Nanopore sequencing reads of T04

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918113) [44]

Data set 5

Nanopore sequencing reads of T05

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918112) [45]

Data set 6

Nanopore sequencing reads of T06

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918111) [46]

Data set 7

Nanopore sequencing reads of T07

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918110) [47]

Data set 8

Nanopore sequencing reads of T08

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918109) [48]

Data set 9

Nanopore sequencing reads of T09

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918108) [49]

Data set 10

Nanopore sequencing reads of T10

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918107) [50]

Data set 11

Nanopore sequencing reads of T11

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918122) [51]

Data set 12

Nanopore sequencing reads of T12

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918121) [52]

Data set 13

Nanopore sequencing reads of T13

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918120) [53]

Data set 14

Nanopore sequencing reads of T14

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918119) [54]

Data set 15

Nanopore sequencing reads of T15

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918118) [55]

Data set 16

Nanopore sequencing reads of T16

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918117) [56]

Data set 17

Nanopore sequencing reads of T17

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918116) [57]

Data set 18

Nanopore sequencing reads of T18

fastq (.fastq.gz)

NCBI Sequence Read Archive(https://identifiers.org/ncbi/insdc.sra:SRR14918115) [58]