Uncovering novel MHC alleles from RNA-Seq data: expanding the spectrum of MHC class I alleles in sheep

BMC Genomic Data

Table 2 MHC class I alleles per individual

Sheep	Classical MHC class I alleles						Putative non-classical MHC class I alleles
	1	2	3	4	5	6	1	2	3	4	5
01	U03094.1	LfL2037	LfL2003				LfL2001	LfL2006	LfL2015
02	U03094.1	JQ824375.1	LfL2003				LfL2001	LfL2006	LfL2004	LfL2008
03	U03094.1	LfL2031	LfL2003				LfL2006	LfL2004	LfL2015	LfL2051	LfL2060
04	LfL2005	LfL2011	N*11:01				LfL2013e
05	LfL2012	LfL2072	LfL2014	LfL2016	LfL2052	LfL2055	LfL2013a	LfL2015
06	LfL2005	LfL2011	LfL2054				LfL2015	LfL2017
07	LfL2021	LfL2022	LfL2020	LfL2059			LfL2057	LfL2064
08	LfL2021	LfL2022	LfL2024				LfL2013a	LfL2023	LfL2058	LfL2046a
09	LfL2025	LfL2026					LfL2015
10	LfL2028	LfL2027					LfL2064	LfL2057	LfL2015
11	LfL2035	LfL2031	LfL2034a				U03093	LfL2036
12	LfL2021	LfL2022	LfL2034b	LfL2037	LfL2041		LfL2001	LfL2015	LfL2046b
13	LfL2020	LfL2059	LfL2027				LfL2043	LfL2023	LfL2015
14	LfL2020	LfL2059	LfL2047	LfL2044			U03093	LfL2046b	LfL2015
15	LfL2021	LfL2022	LT984558				LfL2013e	N*50:01	LfL2008
16	LfL2083	LfL2084	LfL2085	LfL2086			LfL2082	LfL2087	LfL2088	LfL2089	LfL2090
17	LfL2091	LfL2094	LfL2095	N*11:01			LfL2092	LfL2093	LfL2096
18	LfL2098	LfL2099	LfL2102	LfL2103			LfL2097	LfL2100	LfL2101	LfL2104	LfL2105

MHC class I alleles identified by DinoMfRS from Texel x Scottish Blackface crossbreed (01–06), from Merino sheep (07–15), one Rambouillet (16, BENZ2616), one Husheep (17, sample accession SAMN13678651) and on Ovis ammon polii x Ovis aries cross (18, sample accession SAMN26012028)

ISSN: 2730-6844