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Table 2 Genetic parameters of fifteen SNPs in the PRKG2 gene in Dezhou donkey

From: Polymorphism detection of PRKG2 gene and its association with the number of thoracolumbar vertebrae and carcass traits in Dezhou donkey

 

Genotypic frequencies

Allelic frequencies

HWE

Ho

He

Ne

PIC

 

DD

ID

II

D

I

g.162140112A > G

0.5259

0.4000

0.0741

0.7259

0.2741

0.9160

0.2705

0.7295

3.6966

0.7054

g.162149155G > C

0.3990

0.4507

0.1502

0.6244

0.3756

0.4313

0.5310

0.4690

1.8834

0.3590

g.162149571C > T

0.3768

0.4704

0.1527

0.6121

0.3879

0.8506

0.5251

0.4749

1.9043

0.3621

g.162153251G > A

0.0785

0.1599

0.7616

0.1584

0.8416

0.0000

0.7333

0.2667

1.3636

0.2311

g.162156524C > T

0.0630

0.2598

0.6772

0.1929

0.8071

0.0012

0.6886

0.3114

1.4522

0.2629

g.162158453C > T

0.0542

0.3424

0.6034

0.2254

0.7746

0.6951

0.6508

0.3492

1.5365

0.2882

g.162160146 T > C

0.0640

0.3596

0.5764

0.2438

0.7562

0.6167

0.6313

0.3687

1.5841

0.3007

g.162163775 T > G

0.1141

0.4541

0.4318

0.3412

0.6588

0.8395

0.2769

0.7230

3.6112

0.6914

g.162166224G > A

0.1404

0.4901

0.3695

0.3855

0.6145

0.4859

0.2841

0.7159

3.5198

0.6792

g.162166654 T > A

0.1404

0.4901

0.3695

0.3855

0.6145

0.4859

0.2841

0.7159

3.5198

0.6792

g.162167165C > A

0.1404

0.4901

0.3695

0.3855

0.6145

0.4859

0.2841

0.7159

3.5198

0.6792

g.162167314A > C

0.1404

0.4901

0.3695

0.3855

0.6145

0.4859

0.2841

0.7159

3.5198

0.6792

g.162172653G > C

0.1379

0.4926

0.3695

0.3842

0.6158

0.4084

0.2852

0.7148

3.5065

0.6779

g.162182976C > T

0.0815

0.4370

0.4815

0.3000

0.7000

0.4143

0.2781

0.7219

3.5956

0.6935

g.162216538G > A

0.4693

0.3464

0.1844

0.6425

0.3575

0.0000

0.5406

0.4594

1.8498

0.3539

  1. HWE Hardy–Weinberg equilibrium, Ho homozygosity, He heterozygosity, Ne effective allele numbers, PIC polymorphic information content
  2. PIC < 0.25, low polymorphism; 0.25 < PIC < 0.5, intermediate polymorphism; PIC > 0.5, high polymorphism
  3. II = normal genotype; DD = mutation genotype; ID = heterozygote genotype