Table 3 Important SNPs detected of different traits under same environment and density
Environment | Densitya | Traits | SNP | Chr | Position (bp) b | P-value | Allele | bin | PVE (%) |
|---|---|---|---|---|---|---|---|---|---|
2015BD | L | SBS | Chr2_233691764 | 2 | 233,691,764 | 1.23E-05 | C/G | 2.09 | 13.55 |
TID | Chr2_233691764 | 2 | 233,691,764 | 2.10E-05 | C/G | 2.09 | 16.43 | ||
FID | Chr2_233691764 | 2 | 233,691,764 | 5.34E-05 | C/G | 2.09 | 14.90 | ||
TID | Chr2_101115591 | 2 | 101,115,591 | 5.37E-05 | A/G | 2.05 | 15.25 | ||
RPR | Chr6_113876033 | 6 | 113,876,033 | 4.13E-05 | G/T | 6.04 | 11.98 | ||
TID | Chr6_129298262 | 6 | 129,298,262 | 4.52E-05 | C/T | 6.05 | 15.80 | ||
TID | Chr6_129298294 | 6 | 129,298,294 | 4.67E-05 | A/C | 6.05 | 15.86 | ||
FID | Chr6_129298262 | 6 | 129,298,262 | 2.86E-05 | C/T | 6.05 | 15.55 | ||
FID | Chr6_129298294 | 6 | 129,298,294 | 3.58E-05 | A/C | 6.05 | 15.57 | ||
H | TIL | Chr1_289271328 | 1 | 289,271,328 | 1.58E-05 | C/T | 1.11 | 18.14 | |
TID | Chr2_101115591 | 2 | 101,115,591 | 3.06E-05 | A/G | 2.05 | 16.94 | ||
TIL | Chr2_157483756 | 2 | 157,483,756 | 5.14E-05 | C/T | 2.06 | 17.00 | ||
FIL | Chr2_157483756 | 2 | 157,483,756 | 7.13E-06 | C/T | 2.06 | 20.70 | ||
TID | Chr2_11053123 | 2 | 11,053,123 | 9.32E-05 | A/G | 2.02 | 15.54 | ||
FID | Chr2_11053123 | 2 | 11,053,123 | 9.69E-05 | A/G | 2.02 | 14.53 | ||
RPR | Chr6_113876033 | 6 | 113,876,033 | 4.24E-05 | G/T | 6.04 | 11.84 | ||
TIL | Chr9_26826507 | 9 | 26,826,507 | 5.79E-06 | C/T | 9.03 | 19.48 | ||
FIL | Chr9_26826507 | 9 | 26,826,507 | 4.94E-05 | C/T | 9.03 | 18.65 | ||
2015SJZ | L | TID | Chr1_159420156 | 1 | 159,420,156 | 3.03E-05 | C/T | 1.05 | 15.68 |
FID | Chr1_159420166 | 1 | 159,420,166 | 4.18E-05 | C/T | 1.05 | 16.59 | ||
H | TID | Chr1_251713297 | 1 | 251,713,297 | 3.36E-05 | G/T | 1.09 | 17.43 | |
FID | Chr1_251713297 | 1 | 251,713,297 | 9.44E-05 | G/T | 1.09 | 15.62 | ||
TID | Chr2_209021682 | 2 | 209,021,682 | 4.15E-05 | C/T | 2.08 | 17.47 | ||
FID | Chr2_209021682 | 2 | 209,021,682 | 9.88E-05 | C/T | 2.08 | 15.83 | ||
TID | Chr2_4671519 | 2 | 4,671,519 | 9.11E-05 | C/T | 2.02 | 16.75 | ||
FID | Chr2_4671519 | 2 | 4,671,519 | 3.25E-05 | C/T | 2.02 | 17.32 | ||
TID | Chr4_79001631 | 4 | 79,001,631 | 5.25E-05 | G/T | 4.05 | 17.53 | ||
FID | Chr4_79001631 | 4 | 79,001,631 | 7.59E-05 | G/T | 4.05 | 16.45 | ||
2016BD | L | TID | Chr1_256791485 | 1 | 256,791,485 | 4.71E-05 | A/G | 1.09 | 14.17 |
FID | Chr1_256791485 | 1 | 256,791,485 | 1.82E-05 | A/G | 1.09 | 13.16 | ||
TID | Chr4_175218919 | 4 | 175,218,919 | 7.09E-05 | A/G | 4.07 | 14.51 | ||
FID | Chr4_175218919 | 4 | 175,218,919 | 7.45E-05 | A/G | 4.07 | 12.32 | ||
FIL | Chr6_98760375 | 6 | 98,760,375 | 3.80E-05 | C/T | 6.03 | 15.70 | ||
H | TIL | Chr1_289271328 | 1 | 289,271,328 | 1.58E-05 | C/T | 1.11 | 18.14 | |
FIL | Chr6_98760375 | 6 | 98,760,375 | 4.00E-05 | C/T | 6.03 | 16.05 | ||
TIL | Chr6_147922112 | 6 | 147,922,112 | 1.22E-05 | C/T | 6.05 | 17.33 | ||
FIL | Chr6_147922112 | 6 | 147,922,112 | 6.47E-05 | C/T | 6.05 | 15.17 | ||
2016SJZ | L | TID | Chr1_148452951 | 1 | 148,452,951 | 2.91E-05 | G/T | 1.05 | 15.33 |
FID | Chr1_148452951 | 1 | 148,452,951 | 7.54E-06 | G/T | 1.05 | 16.33 | ||
TID | Chr1_148452943 | 1 | 148,452,943 | 5.60E-05 | C/G | 1.05 | 15.29 | ||
FID | Chr1_148452943 | 1 | 148,452,943 | 4.91E-05 | C/G | 1.05 | 14.89 | ||
TID | Chr2_54407952 | 2 | 54,407,952 | 3.00E-05 | C/T | 2.05 | 15.50 | ||
TIL | Chr2_216932638 | 2 | 216,932,638 | 3.76E-05 | A/G | 2.08 | 16.81 | ||
FIL | Chr2_216932638 | 2 | 216,932,638 | 3.15E-05 | A/G | 2.08 | 16.12 | ||
TIL | Chr2_216932653 | 2 | 216,932,653 | 6.35E-05 | A/C | 2.08 | 15.93 | ||
FIL | Chr2_216932653 | 2 | 216,932,653 | 2.51E-05 | A/C | 2.08 | 16.09 | ||
TID | Chr2_45966977 | 2 | 45,966,977 | 4.37E-05 | C/G | 2.04 | 15.39 | ||
FID | Chr2_45966977 | 2 | 45,966,977 | 4.88E-05 | C/G | 2.04 | 14.68 | ||
TID | Chr3_191764915 | 3 | 191,764,915 | 8.68E-06 | A/C | 3.07 | 16.38 | ||
FID | Chr3_191764915 | 3 | 191,764,915 | 1.06E-05 | A/C | 3.07 | 15.49 | ||
TID | Chr4_235448449 | 4 | 235,448,449 | 7.48E-05 | A/G | 4.09 | 14.25 | ||
FID | Chr4_235448449 | 4 | 235,448,449 | 4.44E-05 | A/G | 4.09 | 14.24 | ||
H | TIL | Chr1_289271328 | 1 | 289,271,328 | 7.74E-05 | C/T | 1.11 | 16.66 | |
TID | Chr2_54407952 | 2 | 54,407,952 | 2.19E-06 | C/T | 2.04 | 16.10 | ||
FID | Chr2_54407952 | 2 | 54,407,952 | 1.57E-06 | C/T | 2.04 | 14.97 | ||
TID | Chr2_54407976 | 2 | 54,407,976 | 4.52E-06 | C/T | 2.04 | 15.48 | ||
FID | Chr2_54407976 | 2 | 54,407,976 | 5.07E-06 | C/T | 2.04 | 14.76 | ||
TID | Chr2_12921336 | 2 | 12,921,336 | 5.30E-05 | A/C | 2.02 | 11.99 | ||
FID | Chr2_12921336 | 2 | 12,921,336 | 3.41E-05 | A/C | 2.02 | 12.37 | ||
TID | Chr2_12921363 | 2 | 12,921,363 | 9.33E-05 | C/T | 2.02 | 11.23 | ||
FID | Chr2_12921363 | 2 | 12,921,363 | 4.23E-05 | C/T | 2.02 | 12.00 | ||
TID | Chr3_8597909 | 3 | 8,597,909 | 5.23E-05 | A/G | 3.02 | 11.91 | ||
FID | Chr3_8597909 | 3 | 8,597,909 | 4.64E-05 | A/G | 3.02 | 11.93 | ||
TIL | Chr5_10438064 | 5 | 10,438,064 | 8.53E-05 | C/T | 5.02 | 16.56 | ||
FIL | Chr5_10438064 | 5 | 10,438,064 | 7.21E-05 | C/T | 5.02 | 14.30 | ||
TID | Chr5_125087688 | 5 | 125,087,688 | 4.98E-05 | A/G | 5.04 | 12.19 | ||
FID | Chr5_125087688 | 5 | 125,087,688 | 4.32E-05 | A/G | 5.04 | 11.67 |