Table 4 Spicule matrix proteins retrieved from the database. Each line corresponds to individual proteins, for which we list accession numbers of corresponding reference sequences from the NCBI, GenBank or UniProt databases. The numerical values in the table represent the number of species in each class of the phylum that had a BLAST match to the reference sequence
From: EchinoDB: an update to the web-based application for genomic and transcriptomic data on echinoderms
DataBase (Accession) | Protein | Description | Asteroidea | Ophiuroidea | Echinoidea | Holothuroidea | Crinoidea |
|---|---|---|---|---|---|---|---|
NCBI (NP_999775.2) | SpSM50 | 50 kDa spicule matrix protein precursor [Strongylocentrotus purpuratus] | 2 | 1 | 4 | 0 | 0 |
NCBI (NP_999776.1) | SpSM37 | spicule matrix protein SM37 precursor [Strongylocentrotus purpuratus] | 0 | 1 | 3 | 6 | 1 |
NCBI (NP_999803.1) | SpSM32 | spicule matrix protein SM32 precursor [Strongylocentrotus purpuratus] | 2 | 2 | 4 | 3 | 1 |
UniProt (P28163/SM30_STRPU) | SpSM30B/C | 30 kDa spicule matrix protein precursor [Strongylocentrotus purpuratus] | 4 | 1 | 4 | 1 | 0 |
NCBI (NP_999804.1) | SpSM29 | spicule matrix protein SM29 precursor [Strongylocentrotus purpuratus] | 2 | 0 | 4 | 0 | 0 |
GenBank (CAA42179.1) | LSM34 | spicule matrix 34 kd protein [Lytechinus pictus] | 2 | 2 | 4 | 1 | 0 |
UniProt (Q25116) | HSM30 | 30 kDa spicule matrix protein [Hemicentrotus pulcherrimus] | 1 | 1 | 4 | 0 | 0 |
UniProt (Q26264) | HSM41 | 41 kDa spicule matrix protein [Hemicentrotus pulcherrimus] | 2 | 2 | 4 | 0 | 0 |
UniProt (Q95W96) | PM27 | Primary mesenchyme-specific protein [Heliocidaris erythrogramma] | 1 | 3 | 3 | 3 | 0 |