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Table 1 Raw reads from the various echinoderm species that are available in NCBI’s SRA and Zenodo (doi: https://doi.org/10.5281/zenodo.6985492). Each line corresponds to transcriptome or gene expression data. Orthoclusters: number of orthoclusters. Sequences: number of amino acids or coding sequences. Length: sum of base pairs in all sequences. See complete table in Additional file 1: Table S1

From: EchinoDB: an update to the web-based application for genomic and transcriptomic data on echinoderms

Class: Order: Family

Species

Accession

SRR

Orthoclusters

Sequences

Length

Crinoidea: Comatulida: Zenometridae

Psathryometra fragilis

PRJNA299480

SRR2846085

6651

9015

3.16E+ 07

Asteroidea: Velatida: Xyloplacidae

Xyloplax sp. Janetae (BJ2)

PRJNA299326

SRR2846120

17,993

24,452

5.65E+ 07

Asteroidea: Spinulosida: Echinasteridae

Echinaster spinulosus

PRJNA300370

SRR2844624

13,844

18,608

6.41E+ 07

Ophiuroidea: Ophiocomidea: Ophiocomidae

Ophiocoma wendtii

PRJNA299897

SRR2845427

3662

9783

8.82E+ 07

Ophiuroidea: Gnathophiuridea: Ophiotrichidae

Ophiothrix spiculata

PRJNA299898

SRR2845448

8118

18,816

7.34E+ 07

Asteroidea: Velatida: Pterasteridae

Pteraster tesselatus

PRJNA299398

SRR2846094

46,531

51,762

1.71E+ 08

Holothuroidea: Apodida: Synaptidae

Synapta maculata

PRJNA299890

SRR2846103

5309

11,154

8.44E+ 07

Echinoidea: Echinoida: Strongylocentrotidae

Strongylocentrotus purpuratus

PRJNA299888

SRR2846101

6885

11,368

4.15E+ 07

Asteroidea: Forcipulatida: Asteriidae

Pisaster ochraceus

PRJNA299406

SRR2846074

37,807

43,479

1.68E+ 08

Holothuroidea: Dendrochirotida: Psolidae

Psolus sp. (BJ11)

PRJNA299550

NA

24,634

35,310

1.91E+ 08

Holothuroidea: Aspidochirotida: Stichopodidae

Stichopus chloronotus

PRJNA299896

SRR2846098

17,953

24,854

1.09E+ 08

Crinoidea: Comatulida: Colobometridae

Oligometra serripinna

PRJNA299464

SRR2845419

55,472

70,278

2.11E+ 08

Crinoidea: Comatulida: Bourgueticrinidae

Democrinus brevis

PRJNA299465

SRR2844622

6285

8287

4.72E+ 07

Asteroidea: Velatida: Korethrasteridae

Peribolaster folliculatus (BJ19)

PRJNA299409

SRR2845673

16,927

20,462

8.32E+ 07

Asteroidea: Paxillosida: Astropectinidae

Psilaster charcoti

PRJNA299410

SRR2846092

24,055

28,413

9.41E+ 07

Asteroidea: Forcipulatida: Labidiasteridae

Labidiaster annulatus

PRJNA299411

SRR2845003

35,615

40,071

1.43E+ 08

Asteroidea: Velatida: Korethrasteridae

Remaster gourdoni

PRJNA299412

SRR2846097

18,288

22,056

8.21E+ 07

Crinoidea: Hyocrinida: Hyocrinidae

Gephyrocrinus messingi

PRJNA300546

SRR2859800

8950

12,234

4.42E+ 07

Asteroidea: Paxillosida: Luidiidae

Luidia clathrata

PRJNA299414

SRR2845324

36,915

77,487

9.42E+ 07

Asteroidea: Spinulosida: Echinasteridae

Henricia leviuscula A

PRJNA299415

SRR2844627

47,492

76,684

9.58E+ 07

Asteroidea: Paxillosida: Astropectinidae

Astropecten duplicatus

PRJNA299417

SRR2843238

42,051

73,744

9.13E+ 07

Asteroidea: Valvatida: Poraniidae

Glabraster antarctica (BJ28)

PRJNA299418

SRR2844625

28,408

54,328

7.71E+ 07

Asteroidea: Valvatida: Asteropseidae

Asteropsis carinifera

PRJNA299419

SRR2843236

25,973

49,607

6.51E+ 07

Asteroidea: Valvatida: Solasteridae

Peribolaster folliculatus (BJ30)

PRJNA299409

SRR2845673

22,319

36,551

5.25E+ 07

Asteroidea: Notomyotida: Benthopectinidae

Cheiraster hirsutus

PRJNA299420

SRR2844620

325

1271

6.85E+ 06

Asteroidea: Brisingida: Brisingidae

Odinella nutrix

PRJNA299463

SRR2845408

312

1004

6.83E+ 06

Crinoidea: Comatulida: Ptilometridae

Ptilometra australis

PRJNA299466

SRR2846095

33,084

49,470

7.31E+ 07

Crinoidea: Comatulida: Comasteridae

Cenolia new species

PRJNA299468

SRR2847917

11,658

18,875

3.51E+ 07

Crinoidea: Comatulida: Antedonidae

Isometra vivipara

PRJNA299471

SRR2844835

27,204

43,689

7.02E+ 07

Crinoidea: Comatulida: Antedonidae

Phrixometra nutrix

PRJNA299469

SRR2846073

4923

12,283

2.83E+ 07

Crinoidea: Comatulida: Antedonidae

Promachocrinus kerguelensis

PRJNA299478

SRR2846076

8011

12,283

2.83E+ 07

Echinoidea: Arbacioida: Arbaciidae

Arbacia punctulata

PRJNA299547

SRR2843235

13,324

33,220

4.86E+ 07

Echinoidea: Cidaroida: Cidaridae

Eucidaris tribuloides

PRJNA299548

SRR2844624

6939

16,512

2.97E+ 07

Echinoidea: Clypeasteroida: Dendrasteridae

Dendraster excentricus

PRJNA299549

SRR2844623

4619

12,561

6.57E+ 07

Holothuroidea: Dendrochirotacea: Psolidae

Psolus sp. (BJ41)

PRJNA299550

NA

16,398

33,062

7.32E+ 07

Holothuroidea: Aspidochirotida: Synallactidae

Peniagone sp. (BJ42)

PRJNA299551

NA

12,286

22,457

5.25E+ 07

Holothuroidea: Dendrochirotacea: Cucumariidae

Abyssocucumis sp. (BJ43)

PRJNA299552

SRR2830762

12,309

26,171

5.47E+ 07

Holothuroidea: Aspidochirotida: Synallactidae

Pseudostichopus sp. (BJ44)

PRJNA299883

NA

2464

5567

1.36E+ 07

Holothuroidea: Molpadida: Molpadidae

Molpadia intermedia

PRJNA299884

SRR2845419

3793

6516

1.53E+ 07

Holothuroidea: Elasipodida: Laetmogonidae

Pannychia moseleyi

PRJNA299885

NA

10,124

20,051

3.96E+ 07

Ophiuroidea: Euryalida: Gorgonocephalidae

Astrophyton muricatum

PRJNA299886

SRR2843239

11,730

26,889

7.31E+ 07

Ophiuroidea: Ophiurida: Ophiodermatidae

Ophioderma brevispinum

PRJNA299887

SRR2845428

11,757

28,450

6.52E+ 07