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Fig. 2 | BMC Genomic Data

Fig. 2

From: EchinoDB: an update to the web-based application for genomic and transcriptomic data on echinoderms

Fig. 2

Usage example illustrating the search for Notch-related sequences in the brittle star O. brevispinum and other echinoderms. a Screenshot of the OphiuroidDB main page (https://echinodb.uncc.edu/BStarApp/) [22]. The image shows the results after searching for the keyword “Notch” against the database of the brittle star O. brevispinum. The interface allows the selection of any record on the results page to view the sequence. b Representative amino acid sequence from one selected Notch-related gene in OphiuroidDB. c Results after searching for the keyword “Notch” in EchinoDB (https://echinodb.uncc.edu) [18]. In this example, the search was conducted against the repository of clusters of orthologous genes discovered from echinoderm transcriptomes. A selected record will be highlighted, and amino acid sequences from the orthocluster repository will be displayed. d Amino acid sequence clusters of the selected orthologous record of the Notch-related gene from the EchinoDB repository

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