From: HYAL3 as a potential novel marker of BLCA patient prognosis
Cell type | Gene marker | None | Purity | Tumor | Normal | ||||
---|---|---|---|---|---|---|---|---|---|
Cor | P | Cor | P | Cor | P | Cor | P | ||
B cells | CD19 | −0.105 | * | − 0.128 | * | − 0.091 | 0.069 | 0.24 | 0.32 |
CD20 (KRT20) | 0.056 | 0.258 | 0.067 | 0.198 | 0.093 | 0.061 | 0.43 | 0.064 | |
CD38 | −0.083 | 0.094 | −0.097 | 0.063 | − 0.079 | 0.11 | 0.69 | 0.097 | |
CD8+ T cells | CD8A | − 0.084 | 0.089 | − 0.089 | 0.115 | − 0.042 | 0.4 | 0.16 | 0.51 |
CD8B | −0.065 | 0.188 | −0.055 | 0.292 | 0.01 | 0.84 | 0.15 | 0.54 | |
Tfh | BCL6 | −0.137 | ** | −0.153 | ** | −0.076 | 0.13 | −0.37 | 0.12 |
ICOS | −0.155 | * | −0.122 | * | −0.069 | 0.17 | 0.25 | 0.31 | |
CXCR5 | −0.084 | 0.09 | −0.111 | * | 0.19 | 0.066 | 0.31 | 0.2 | |
Th1 | T-bet (TBX21) | −0.099 | * | −0.11 | * | −0.063 | 0.21 | 0.28 | 0.24 |
STAT4 | −0.133 | ** | −0.148 | ** | −0.069 | 0.17 | 0.2 | 0.42 | |
IL12RB2 | −0.039 | 0.4 | −0.02 | 0.7 | −0.017 | 0.73 | 0.24 | 0.32 | |
WSX1 (IL27RA) | 0.183 | ** | 0.23 | *** | 0.25 | *** | 0.15 | 0.55 | |
STAT1 | −0.091 | 0.06 | −0.099 | 0.06 | −0.055 | 0.27 | 0.34 | 0.15 | |
IFN-γ (IFNG) | −0.061 | 0.218 | −0.053 | 0.3 | −0.013 | 0.79 | −0.18 | 0.45 | |
TNF-α (TNF) | 0.021 | 0.7 | 0.04 | 0.4 | −0.024 | 0.63 | 0.043 | 0.86 | |
Th2 | GATA3 | −0.005 | 0.923 | 0.006 | 9.14 × 10−4 | − 0.00084 | 0.99 | 0.25 | 0.3 |
CCR3 | 0.104 | * | 0.102 | * | 0.055 | 0.27 | −0.17 | 0.49 | |
STAT6 | −0.164 | *** | −0.165 | *** | −0.14 | ** | −0.16 | 0.5 | |
STAT5A | 0.026 | 0.6 | 0.03 | 0.56 | 0.013 | 0.79 | −0.45 | 0.051 | |
Th9 | TGFBR2 | 0.006 | 0.9 | 0.005 | 0.9 | 0.11 | * | −0.48 | * |
IRF4 | −0.092 | 0.06 | −0.118 | * | −0.089 | 0.073 | 0.25 | 0.31 | |
PU.1 (SPI1) | −0.05 | 0.31 | −0.069 | 0.18 | 0.055 | 0.27 | −0.052 | 0.83 | |
Th17 | STAT3 | −0.052 | 0.299 | −0.07 | 0.181 | 0.0048 | 0.92 | −0.32 | 0.18 |
IL21R | −0.071 | 0.154 | −0.088 | 0.09 | −0.023 | 0.64 | 0.18 | 0.46 | |
IL23R | −0.072 | 0.147 | −0.087 | 0.09 | −0.031 | 0.53 | 0.14 | 0.57 | |
IL17A | −0.059 | 0.236 | −0.048 | 0.36 | 0.022 | 0.66 | −0.2 | 0.41 | |
Th22 | CCR10 | 0.068 | 0.17 | 0.075 | 0.15 | 0.11 | * | −0.17 | 0.48 |
AHR | −0.056 | 0.26 | −0.043 | 0.411 | 0.009 | 0.86 | 0.16 | 0.53 | |
Tregs | FOXP3 | −0.107 | * | −0.112 | * | −0.045 | 0.37 | −0.0053 | 0.98 |
CD25 (IL2RA) | −0.066 | 0.186 | −0.076 | 0.146 | −0.006 | 0.9 | −0.15 | 0.54 | |
CCR8 | −0.118 | 0.018 | −0.126 | 0.016 | −0.066 | 0.18 | 0.0081 | 0.97 | |
T cell exhaustion | PD-1 (PDCD1) | −0.095 | 0.055 | −0.098 | 0.059 | −0.056 | 0.26 | 0.25 | 0.31 |
CTLA4 | −0.118 | * | −0.119 | * | −0.088 | 0.078 | 0.24 | 0.33 | |
LAG3 | −0.037 | 0.459 | −0.02 | 0.7 | −0.011 | 0.82 | 0.08 | 0.74 | |
TIM-3 (HAVCR2) | −0.056 | 0.257 | −0.067 | 0.198 | 0.0077 | 0.88 | −0.11 | 0.65 | |
Macrophages | CD68 | −0.08 | 0.1 | −0.094 | 0.06 | 0.021 | 0.67 | −0.041 | 0.87 |
CD11b (ITGAM) | 0.013 | 0.788 | 0.022 | 0.676 | 0.017 | 0.73 | −0.36 | 0.13 | |
M1 | INOS (NOS2) | 0.053 | 0.289 | 0.071 | 0.174 | −0.0016 | 0.97 | 0.19 | 0.44 |
IRF5 | 0.064 | 0.197 | 0.077 | 0.142 | 0.12 | * | 0.36 | 0.13 | |
COX2 (PTGS2) | −0.04 | 0.416 | −0.043 | 0.413 | 0.079 | 0.11 | −0.22 | 0.36 | |
M2 | CD163 | 0.018 | 0.716 | 0.025 | 0.628 | 0.04 | 0.43 | −0.38 | 0.11 |
ARG1 | −0.04 | 0.42 | −0.015 | 0.77 | 0.034 | 0.5 | −0.09 | 0.71 | |
MRC1 | 0.005 | 0.922 | 0.012 | 0.814 | 0.02 | 0.68 | −0.45 | 0.052 | |
MS4A4A | −0.029 | 0.562 | −0.033 | 0.529 | 0.042 | 0.4 | −0.48 | * | |
TAMs | CCL2 | 0.025 | 0.618 | 0.047 | 0.369 | −0.018 | 0.71 | −0.26 | 0.28 |
CD80 | −0.05 | 0.31 | −0.048 | 0.363 | −0.038 | 0.45 | 0.14 | 0.57 | |
CD86 | −0.085 | 0.08 | −0.104 | 0.045 | −0.04 | 0.43 | 0.012 | 0.96 | |
CCR5 | −0.054 | 0.278 | −0.058 | 0.264 | −0.028 | 0.58 | 0.29 | 0.24 | |
Monocytes | CD14 | −0.01 | 0.834 | −0.015 | 0.781 | 0.075 | 0.13 | −0.27 | 0.27 |
CD16 (FCGR3B) | 0.014 | 0.785 | 0.045 | 0.385 | 0.057 | 0.26 | −0.13 | 0.59 | |
CD115 (CSF1R) | −0.057 | 0.249 | −0.078 | 0.135 | 0.072 | 0.15 | −0.37 | 0.12 | |
Neutrophils | CD66b (CEACAM8) | 0.035 | 0.475 | 0.04 | 0.44 | 0.043 | 0.38 | 0.33 | 0.16 |
CD15 (FUT4) | 0.132 | ** | 0.13 | * | 0.12 | * | 0.069 | 0.78 | |
CD11b (ITGAM) | 0.013 | 0.788 | 0.022 | 0.676 | 0.017 | 0.73 | −0.36 | 0.13 | |
Natural killer cells | XCL1 | −0.09 | 0.07 | −0.069 | 0.184 | −0.055 | 0.27 | −0.11 | 0.64 |
CD7 | −0.058 | 0.247 | −0.051 | 0.331 | 0.0027 | 0.96 | 0.14 | 0.56 | |
KIR3DL1 | −0.059 | 0.236 | −0.056 | 0.28 | 0.021 | 0.68 | 0.29 | 0.24 | |
Dendritic cells | CD1C (BDCA-1) | −0.151 | ** | −0.176 | ** | −0.037 | 0.45 | 0.64 | ** |
CD141(THBD) | −0.084 | 0.08 | −0.093 | 0.07 | −0.042 | 0.4 | 0.0052 | 0.98 | |
CD11c (ITGAX) | −0.012 | 0.8 | −0.012 | 0.805 | −0.029 | 0.56 | 0.19 | 0.44 |