Table 3 The codons statistics with high and low expression genes of HaWRKY genome
From: Analysis of codon usage bias of WRKY transcription factors in Helianthus annuus
Amino acid | Codon | High expressed gene | Low expressed gene | ΔRSCU | ||
|---|---|---|---|---|---|---|
Frequency | RSCU | Frequency | RSCU | |||
Ala (A) | GCU | 24 | 1.68 | 39 | 1.25 | 0.43 |
| Â | GCC | 11 | 0.77 | 36 | 1.15 | -0.38 |
| Â | GCA | 20 | 1.4 | 31 | 0.99 | 0.41 |
| Â | GCG | 2 | 0.14 | 19 | 0.61 | -0.47 |
Cys (C) | UGU | 24 | 1.37 | 21 | 1.2 | 0.17 |
| Â | UGC | 11 | 0.63 | 14 | 0.8 | -0.17 |
Asp (D) | GAU | 92 | 1.63 | 83 | 1.18 | 0.45 |
| Â | GAC | 21 | 0.37 | 58 | 0.82 | -0.45 |
Glu (E) | GAA | 77 | 1.34 | 82 | 1.13 | 0.21 |
| Â | GAG | 38 | 0.66 | 63 | 0.87 | -0.21 |
Phe (F) | UUU | 40 | 1.29 | 43 | 1.19 | 0.1 |
| Â | UUC | 22 | 0.71 | 29 | 0.81 | -0.1 |
Gly (G) | GGU | 32 | 1.66 | 46 | 1.45 | 0.21 |
| Â | GGC | 7 | 0.36 | 20 | 0.63 | -0.27 |
| Â | GGA | 24 | 1.25 | 37 | 1.17 | 0.08 |
| Â | GGG | 14 | 0.73 | 24 | 0.76 | -0.03 |
His (H) | CAU | 36 | 1.6 | 43 | 1.13 | 0.47 |
| Â | CAC | 9 | 0.4 | 33 | 0.87 | -0.47 |
Ile (I) | AUU | 29 | 1.21 | 33 | 1.09 | 0.12 |
| Â | AUC | 28 | 1.17 | 32 | 1.05 | 0.12 |
| Â | AUA | 15 | 0.63 | 26 | 0.86 | -0.23 |
Lys (K) | AAA | 72 | 1.04 | 90 | 1.15 | -0.11 |
| Â | AAG | 67 | 0.96 | 66 | 0.85 | 0.11 |
Leu (L) | UUA | 27 | 1.4 | 25 | 1.15 | 0.25 |
| Â | UUG | 23 | 1.19 | 30 | 1.38 | -0.19 |
| Â | CUU | 31 | 1.6 | 27 | 1.25 | 0.35 |
| Â | CUC | 10 | 0.52 | 19 | 0.88 | -0.36 |
| Â | CUA | 20 | 1.03 | 23 | 1.06 | -0.03 |
| Â | CUG | 5 | 0.26 | 6 | 0.28 | -0.02 |
Met (M) | AUG | 46 | 1 | 53 | 1 | 0 |
Asn (N) | AAU | 52 | 1.21 | 65 | 1.01 | 0.2 |
| Â | AAC | 34 | 0.79 | 64 | 0.99 | -0.2 |
Pro (P) | CCU | 34 | 1.27 | 44 | 1.06 | 0.21 |
| Â | CCC | 14 | 0.52 | 27 | 0.65 | -0.13 |
| Â | CCA | 45 | 1.68 | 54 | 1.3 | 0.38 |
| Â | CCG | 14 | 0.52 | 41 | 0.99 | -0.47 |
Gln (Q) | CAA | 69 | 1.57 | 88 | 1.49 | 0.08 |
| Â | CAG | 19 | 0.43 | 30 | 0.51 | -0.08 |
Arg (R) | AGA | 52 | 4 | 26 | 1.33 | 2.67 |
| Â | AGG | 13 | 1 | 30 | 1.54 | -0.54 |
| Â | CGU | 3 | 0.23 | 15 | 0.77 | -0.54 |
| Â | CGC | 0 | 0 | 7 | 0.36 | -0.36 |
| Â | CGA | 6 | 0.46 | 21 | 1.08 | -0.62 |
| Â | CGG | 4 | 0.31 | 18 | 0.92 | -0.61 |
Ser (S) | AGU | 46 | 1.48 | 35 | 0.77 | 0.71 |
| Â | AGC | 18 | 0.58 | 31 | 0.68 | -0.1 |
| Â | UCU | 39 | 1.25 | 68 | 1.49 | -0.24 |
| Â | UCC | 20 | 0.64 | 40 | 0.88 | -0.24 |
| Â | UCA | 39 | 1.25 | 68 | 1.49 | -0.24 |
| Â | UCG | 25 | 0.8 | 32 | 0.7 | 0.1 |
Thr (T) | ACU | 34 | 1.37 | 43 | 0.99 | 0.38 |
| Â | ACC | 26 | 1.05 | 56 | 1.29 | -0.24 |
| Â | ACA | 34 | 1.37 | 44 | 1.02 | 0.35 |
| Â | ACG | 5 | 0.2 | 30 | 0.69 | -0.49 |
Val (V) | GUU | 37 | 1.41 | 44 | 1.43 | -0.02 |
| Â | GUC | 14 | 0.53 | 22 | 0.72 | -0.19 |
| Â | GUA | 23 | 0.88 | 17 | 0.55 | 0.33 |
| Â | GUG | 31 | 1.18 | 40 | 1.3 | -0.12 |
Trp (W) | UGG | 16 | 1 | 21 | 1 | 0 |
Tyr (Y) | UAU | 34 | 1.24 | 39 | 1.07 | 0.17 |
| Â | UAC | 21 | 0.76 | 34 | 0.93 | -0.17 |
Terminator | UAA | 5 | 2.5 | 3 | 1.29 | 1.21 |
| Â | UAG | 0 | 0 | 2 | 0.86 | -0.86 |
| Â | UGA | 1 | 0.5 | 2 | 0.86 | -0.36 |