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Table 2 Codon usage and high frequency used codons in HaWRKY genome

From: Analysis of codon usage bias of WRKY transcription factors in Helianthus annuus

Amino acid

Codon

Frequency

Number

RSCU

Amino acid

Codon

Frequency

Number

RSCU

Ala (A)

GCA

12.49

515

1.22

Pro (P)

CCA

21.80

899

1.46

 

GCC

8.32

343

0.81

 

CCC

8.20

338

0.55

 

GCG

7.03

290

0.69

 

CCG

15.74

649

1.05

 

GCU

13.02

537

1.27

 

CCU

14.07

580

0.94

Cys (C)

UGC

8.46

349

0.92

Gln (Q)

CAA

34.17

1409

1.39

 

UGU

9.99

412

1.08

 

CAG

14.84

612

0.61

Asp (D)

GAC

12.17

502

0.56

Arg (R)

AGA

20.71

854

1.95

 

GAU

30.97

1277

1.44

 

AGG

13.36

551

1.26

Glu (E)

GAA

27.84

1148

1.24

 

CGA

8.68

358

0.82

 

GAG

17.02

702

0.76

 

CGC

4.51

186

0.43

Phe ( F)

UUC

13.29

548

0.82

 

CGG

9.56

394

0.90

 

UUU

19.23

793

1.18

 

CGU

6.84

282

0.64

Gly (G)

GGA

15.86

653

1.28

Ser (S)

AGC

12.47

514

0.78

 

GGC

7.15

295

0.58

 

AGU

16.27

671

1.02

 

GGG

10.67

440

0.86

 

UCA

23.35

963

1.47

 

GGU

15.69

647

1.27

 

UCC

11.11

458

0.70

His (H)

CAC

15.30

631

0.86

 

UCG

12.15

501

0.76

 

CAU

20.13

830

1.14

 

UCU

20.06

827

1.26

Ile (I)

AUA

15.76

650

0.91

Thr (T)

ACA

23.86

984

1.40

 

AUC

18.02

743

1.04

 

ACC

17.73

731

1.04

 

AUU

18.21

751

1.05

 

ACG

11.47

473

0.67

Lys (K)

AAA

36.01

1485

1.10

 

ACU

15.28

630

0.89

 

AAG

29.66

1223

0.90

Val (V)

GUA

10.02

413

0.73

Leu (L)

CUA

13.24

546

0.92

 

GUC

8.95

369

0.65

 

CUC

12.27

506

0.85

 

GUG

16.30

672

1.18

 

CUG

12.34

509

0.85

 

GUU

19.93

822

1.44

 

CUU

17.07

704

1.18

Trp (W)

UGG

13.56

559

1

 

UUA

14.02

578

0.97

Tyr (Y)

UAC

11.47

473

0.90

 

UUG

17.70

730

1.23

 

UAU

14.11

582

1.10

Met (M)

AUG

30.22

1245

1

Terminator

UAA

5.53

228

 

Asn (N)

AAC

24.91

1027

0.97

 

UAG

5.09

210

 
 

AAU

26.65

1099

1.03

 

UGA

8.12

335

 
  1. Note: The highest frequency used codons (RSCU value > 1) are in bold. RSCU, the relative synonymous codon usage value