Fig. 2
From: Developing a bioinformatics pipeline for comparative protein classification analysis
Flow of filter of the bioinformatics pipeline. 1) Database extrapolation of data related to A. thaliana and B. rapa Pekinensis group 2) Unorganized raw data 3) Heuristic Filtering scripts 4) Functional annotation retrieved from Uniprot Swiss/TrEMBL 5) Bias Filtering section 6) “Raw” phylogenetic analysis 7) potential homologous selection 8) Gene ontology/Pfam screening association for functional domains 9) Population analysis simulated – statistics score applied; reference sequences from A. thaliana TAIR database a) phylogeny to analyze the population analysis result coupled with the previous raw phylogenetic analysis results; new databases extrapolation of input data through API and specific phylogenetic analysis of MEP pathway gene products b) comparison of my pipeline with previous findings in B. rapa