Table 1 Number of retroelement-identical sequences in CoV genomes dependent on sequence length (12 – 27 bp, based on 100% sequence identity (alignment by nucmer). Underlines indicate the highest score at the respective cut-off
From: SARS-CoV-2 and human retroelements: a case for molecular mimicry?
CoV | Genbank ID | RE-identical sequences (nucmer) | |||||
|---|---|---|---|---|---|---|---|
≥ 12 bp | ≥ 15 bp | ≥ 18 bp | ≥ 21 bp | ≥ 24 bp | ≥ 27 bp | ||
229E | NC_002645.1 | 16,992 | 4663 | 155 | 8 | 5 | 4 |
NL63 | NC_005831.2 | 17,751 | 5758 | 206 | 4 | 0 | 0 |
OC43 | AY391777.1 | 19,428 | 5709 | 162 | 3 | 0 | 0 |
HKU1 | NC_006577.2 | 19,112 | 6843 | 332 | 13 | 0 | 0 |
MERS-CoV | NC_019843.3 | 18,435 | 4252 | 106 | 3 | 1 | 0 |
SARS-CoV-1 | AY291315.1 | 18,446 | 4731 | 122 | 2 | 1 | 0 |
SARS-CoV-2 | NC_045512.2 | 18,917 | 5358 | 191 | 11 | 3 | 2 |
RsSHC014 | KC881005.1 | 18,425 | 4651 | 114 | 5 | 1 | 0 |
Ra13591 | MG916904.1 | 17,971 | 4644 | 142 | 2 | 0 | 0 |
RaTG13 | MN996532.2 | 18,950 | 5327 | 167 | 4 | 0 | 0 |