From: In depth analysis of Cyprus-specific mutations of SARS-CoV-2 strains using computational approaches
REFa | ALTa | GENEa | NT.POSa | REF.AAa | ALT.AAa | AA.POSa | CY counts11 | CY counts02 | Other counts13 | Other counts04 | P-value5 | OR6 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
C | T | ORF1ab | 18,440 | S | F | 6059 | 60 | 84 | 25 | 242,241 | 6.94E-180 | 6921.17 |
G | T | ORF1ab | 11,557 | E | D | 3764 | 69 | 75 | 928 | 241,338 | 1.03E-124 | 239.26 |
C | T | E | 26,313 | F | F | 23 | 69 | 75 | 1016 | 241,250 | 4.25E-122 | 218.45 |
C | T | ORF1ab | 20,451 | N | N | 6729 | 76 | 68 | 2983 | 239,283 | 5.26E-104 | 89.65 |
T | C | M | 26,972 | R | R | 150 | 77 | 67 | 3988 | 238,278 | 1.86E-96 | 68.67 |
T | C | S | 24,910 | T | T | 1116 | 76 | 68 | 3967 | 238,299 | 8.45E-95 | 67.14 |
G | A | ORF1ab | 15,598 | V | I | 5112 | 76 | 68 | 3973 | 238,293 | 9.45E-95 | 67.03 |
G | T | ORF1ab | 12,988 | M | I | 4241 | 76 | 68 | 3976 | 238,290 | 1.00E-94 | 66.98 |
G | T | ORF1ab | 18,028 | A | S | 5922 | 76 | 68 | 4020 | 238,246 | 2.27E-94 | 66.24 |
C | A | ORF7b | 27,800 | A | A | 15 | 76 | 68 | 4431 | 237,835 | 3.13E-91 | 59.99 |
T | C | ORF1ab | 7767 | I | T | 2501 | 77 | 67 | 5213 | 237,053 | 1.06E-87 | 52.26 |
C | T | ORF1ab | 8047 | Y | Y | 2594 | 76 | 68 | 5199 | 237,067 | 4.44E-86 | 50.96 |
C | T | ORF1ab | 17,104 | H | Y | 5614 | 76 | 68 | 5486 | 236,780 | 2.38E-84 | 48.24 |
C | A | S | 22,879 | N | K | 439 | 76 | 68 | 5501 | 236,765 | 2.92E-84 | 48.10 |
A | G | ORF1ab | 20,268 | L | L | 6668 | 83 | 61 | 16,967 | 225,299 | 4.21E-57 | 18.07 |
C | T | ORF1ab | 14,408 | P | L | 4715 | 143 | 1 | 225,633 | 16,633 | 2.08E-04 | 10.54 |
C | T | ORF1ab | 3037 | F | F | 924 | 143 | 1 | 225,640 | 16,626 | 2.08E-04 | 10.54 |
A | G | S | 23,403 | D | G | 614 | 143 | 1 | 225,843 | 16,423 | 2.36E-04 | 10.40 |