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Table 1 A description of data used in the hsa-mir-548 family analysis of reproductive tissues

From: Hsa-mir-548 family expression in human reproductive tissues

Cellular samples

Tissue of origin

Cell type

Data repository

Accession number

Number of samples

Description

 

Ovary

Granulosa

GEO

GSE46508

6

Two cell types of human granulosa cell samples were obtained from pre-ovulatory follicles: cumulus granulosa (CGC) and mural granulosa (MGC) collected from stimulated pre-ovulatory follicles [10].

 

Uterus

Endometrial tissue

GEO

GSE108966

24

Human endometrial samples were collected from two time-points of the same menstrual cycle: early-secretory phase corresponding to pre-receptive endometrium and mid-secretory phase corresponding to receptive endometrium [27].

 

Uterus

Myometrium tissue

GEO

GSE100338

3

[28]

 

Uterus

Cervix tissue

GEO

GSE145372

4

[29]

 

Testis

Testis tissue

GEO, ENCODE

ENCSR229WIW, ENCSR626GVP and GSE149084

5

Whole testis tissue sections [30].

 

Reproductive track

Non-sperm cellular fraction of seminal fluid (SF)

GEO

GSE56686

1

Non-sperm cellular fraction of SF, which includes prostatic epithelial, urothelial and inflammatory cells [31].

Extracellular samples

Tissue of origin

Cell type

Data repository

Accession number

Number of samples

Description

 

Ovary

Follicular fluid (FF)

GEO

GSE157037

8

Extracellular miRNAs were extracted from cell-depleted ovarian follicular fluid (FF) from stimulated pre-ovulatory follicles [32].