From: Genome-wide association studies of yield-related traits in high-latitude japonica rice
Traits | DH | PH | PW | TI |
---|---|---|---|---|
number of SNPs | 25 | 25 | 223 | 44 |
number of variants | 27 | 26 | 229 | 46 |
number of effects | 81 | 64 | 589 | 133 |
chromosome | 4, 6, 7, 11 | 1, 3–8, 10–12 | 1–12 | 1–12 |
3′ UTR variant | – | – | 3 | – |
5′ UTR variant | 2 | – | 1 | – |
downstream gene variant | 29 | 19 | 170 | 38 |
frameshift variant | – | – | 1 | – |
intergenic region | 16 | 18 | 143 | 31 |
intron variant | 11 | 2 | 33 | 10 |
missense variant | 1 | 3 | 19 | 4 |
splice region variant | – | – | 1 | – |
stop gained | – | – | 1 | – |
synonymous variant | – | 3 | 31 | 4 |
upstream gene variant | 22 | 19 | 187 | 46 |