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Table 1 SNPs identified as mQTLs that also achieved nominal significance level in both CHD GWASs

From: Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart disease

SNP ID

CHR

POSITION a

CpG

POSITION

p.mQTL.BH

p.GWAS1

p.GWAS2

rs1165201

6

25,874,823

cg07061783

25,882,402

2.62e-16

  
  

cg03264133

25,882,463

1.57e-22

0.0364

0.0472

  

cg03517284

25,882,590

5.42e-23

  

rs645279

6

25,880,494

cg07061783

25,882,402

3.30e-22

  
  

cg03264133

25,882,463

2.62e-37

0.0167

0.0245

  

cg03517284

25,882,590

9.79e-41

  

rs112505305

6

25,888,643

cg07061783

25,882,402

1.92e-20

  
  

cg03264133

25,882,463

2.56e-30

0.0216

0.0133

  

cg03517284

25,882,590

6.04e-30

  

kgp3256684

6

26,584,526

cg06728252

26,598,149

1.70e-08

0.0075

0.0109

kgp10820427

6

26,590,801

cg06728252

26,598,149

8.16e-10

0.0017

0.0045

kgp12032951

6

26,597,893

cg06728252

26,598,149

8.16e-10

0.0024

0.0044

rs62394558

6

26,604,650

cg06728252

26,598,149

1.36e-06

0.0259

0.0024

kgp7659217

6

26,608,261

cg06728252

26,598,149

8.16e-10

0.0020

0.0045

kgp6693296

6

26,622,734

cg06728252

26,598,149

1.68e-08

0.0016

0.0054

rs2451731

6

26,624,822

cg06728252

26,598,149

1.68e-08

0.0017

0.0055

rs6552718

6

26,628,005

cg06728252

26,598,149

1.36e-06

0.0413

0.0053

rs1021372

6

26,632,444

cg06728252

26,598,149

1.68e-08

0.0026

0.0042

rs1021373

6

26,632,457

cg06728252

26,598,149

1.68e-08

0.0022

0.0054

rs2451744

6

26,633,463

cg06728252

26,598,149

1.61e-08

0.0032

0.0255

rs2494701

6

26,634,432

cg06728252

26,598,149

1.68e-08

0.0018

0.0063

kgp8313695

6

26,639,613

cg06728252

26,598,149

1.68e-08

0.0013

0.0041

kgp3537733

6

26,641,627

cg06728252

26,598,149

1.68e-08

0.0020

0.0055

rs116073375

6

26,650,826

cg06728252

26,598,149

1.68e-08

0.0020

0.0055

kgp4197236

6

26,662,920

cg06728252

26,598,149

1.68e-08

0.0023

0.0106

kgp4589793

6

32,583,653

cg19575208

32,551,888

9.87e-07

0.0192

0.0457

cg24242384

32,551,954

3.35e-05

  

rs9271573

6

32,590,501

cg08845336

32,551,891

1.24e-06

0.0038

0.0262

cg24242384

32,551,954

9.14e-06

  

rs10953985

7

123,488,985

cg09630417

123,459,295

3.29e-06

0.0359

0.0244

rs10276917

7

123,498,400

cg09630417

123,459,295

3.29e-06

0.0359

0.0255

rs6996562

8

33,392,023

cg20849935

33,432,330

0.001062

0.0495

0.0416

rs9297205

8

33,407,400

cg20849935

33,432,330

2.03e-06

0.0207

0.0417

  1. a Genomic position based on assembly GRCh37/hg19 for all tables and figures