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Table 1 SNPs identified as mQTLs that also achieved nominal significance level in both CHD GWASs

From: Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart disease

SNP ID CHR POSITION a CpG POSITION p.mQTL.BH p.GWAS1 p.GWAS2
rs1165201 6 25,874,823 cg07061783 25,882,402 2.62e-16   
   cg03264133 25,882,463 1.57e-22 0.0364 0.0472
   cg03517284 25,882,590 5.42e-23   
rs645279 6 25,880,494 cg07061783 25,882,402 3.30e-22   
   cg03264133 25,882,463 2.62e-37 0.0167 0.0245
   cg03517284 25,882,590 9.79e-41   
rs112505305 6 25,888,643 cg07061783 25,882,402 1.92e-20   
   cg03264133 25,882,463 2.56e-30 0.0216 0.0133
   cg03517284 25,882,590 6.04e-30   
kgp3256684 6 26,584,526 cg06728252 26,598,149 1.70e-08 0.0075 0.0109
kgp10820427 6 26,590,801 cg06728252 26,598,149 8.16e-10 0.0017 0.0045
kgp12032951 6 26,597,893 cg06728252 26,598,149 8.16e-10 0.0024 0.0044
rs62394558 6 26,604,650 cg06728252 26,598,149 1.36e-06 0.0259 0.0024
kgp7659217 6 26,608,261 cg06728252 26,598,149 8.16e-10 0.0020 0.0045
kgp6693296 6 26,622,734 cg06728252 26,598,149 1.68e-08 0.0016 0.0054
rs2451731 6 26,624,822 cg06728252 26,598,149 1.68e-08 0.0017 0.0055
rs6552718 6 26,628,005 cg06728252 26,598,149 1.36e-06 0.0413 0.0053
rs1021372 6 26,632,444 cg06728252 26,598,149 1.68e-08 0.0026 0.0042
rs1021373 6 26,632,457 cg06728252 26,598,149 1.68e-08 0.0022 0.0054
rs2451744 6 26,633,463 cg06728252 26,598,149 1.61e-08 0.0032 0.0255
rs2494701 6 26,634,432 cg06728252 26,598,149 1.68e-08 0.0018 0.0063
kgp8313695 6 26,639,613 cg06728252 26,598,149 1.68e-08 0.0013 0.0041
kgp3537733 6 26,641,627 cg06728252 26,598,149 1.68e-08 0.0020 0.0055
rs116073375 6 26,650,826 cg06728252 26,598,149 1.68e-08 0.0020 0.0055
kgp4197236 6 26,662,920 cg06728252 26,598,149 1.68e-08 0.0023 0.0106
kgp4589793 6 32,583,653 cg19575208 32,551,888 9.87e-07 0.0192 0.0457
cg24242384 32,551,954 3.35e-05   
rs9271573 6 32,590,501 cg08845336 32,551,891 1.24e-06 0.0038 0.0262
cg24242384 32,551,954 9.14e-06   
rs10953985 7 123,488,985 cg09630417 123,459,295 3.29e-06 0.0359 0.0244
rs10276917 7 123,498,400 cg09630417 123,459,295 3.29e-06 0.0359 0.0255
rs6996562 8 33,392,023 cg20849935 33,432,330 0.001062 0.0495 0.0416
rs9297205 8 33,407,400 cg20849935 33,432,330 2.03e-06 0.0207 0.0417
  1. a Genomic position based on assembly GRCh37/hg19 for all tables and figures