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Table 1 List of genes and their putative function

From: Genome-wide (ChIP-seq) identification of target genes regulated by WRKY33 during submergence stress in Arabidopsis

Gene Name Putative Function Fold-Change
AT1G21650 Preprotein translocase SecA family protein 8.0
AT1G64628 conserved peptide upstream open reading frame 57 5.2
AT2G01008 maternal effect embryo arrest protein 8.1
AT2G15540 non-LTR retrotransposon family 5.2
AT2G18220 Noc2p family 5.2
AT2G29350 senescence-associated gene 13 7.7
AT2G31040 Encodes an integral thylakoid protein that facilitates assembly of the membranous part of the chloroplast ATPase 9.6
AT2G47090 zinc ion binding/nucleic acid binding protein 12.4
AT3G10810 zinc finger (C3HC4-type RING finger) family protein 6.4
AT3G11280 Duplicated homeodomain-like superfamily protein 5.9
AT3G11900 aromatic and neutral transporter 1 7.1
AT3G12120 fatty acid desaturase 2 7.8
AT3G22160 JAV1 is a repressor of jasmonate-mediated defense responses 11.3
AT3G22170 far-red elongated hypocotyls 3 9.5
AT3G27503 Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR 10.6
AT3G30250 transposable element gene 8.0
AT3G33058 gypsy-like retrotransposon family 15.7
AT3G41768 rRNA 10.2
AT3G41979 5.8SrRNA 6.8
AT3G42130 glycine-rich protein 6.2
AT3G45755 transposable element gene 6.1
AT3G52140 tetratricopeptide repeat (TPR)-containing protein 6.2
AT4G10030 Alpha/beta hydrolase domain containing protein involved in lipid biosynthesis 5.3
AT4G20360 Nuclear transcribed, plastid localized EF-Tu translation elongation factor 5.2
AT4G32700 helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 5.3
AT4G32810 carotenoid cleavage dioxygenase 8 5.2
AT4G34035 pre-tRNA tRNA-Arg 9.6
AT4G34040 RING/U-box superfamily protein 7.9
AT4G35090 catalase 2 5.2
AT4G39672 pre-tRNA 6.1
AT5G17420 Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues 30.1
AT5G17730 P-loop containing nucleoside triphosphate hydrolases superfamily protein 8.0
AT5G18650 CHY-type/CTCHY-type/RING-type Zinc finger protein 8.5
AT5G37960 GroES-like family protein 5.4
AT5G40690 histone-lysine N-methyltransferase trithorax-like protein 6.1
AT5G61710 cotton fiber protein 5.3
  1. The genes listed in this table are limited to those associated with peaks that were enriched greater than 5-fold and have been classified with a known function