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Table 1 List of genes and their putative function

From: Genome-wide (ChIP-seq) identification of target genes regulated by WRKY33 during submergence stress in Arabidopsis

Gene Name

Putative Function

Fold-Change

AT1G21650

Preprotein translocase SecA family protein

8.0

AT1G64628

conserved peptide upstream open reading frame 57

5.2

AT2G01008

maternal effect embryo arrest protein

8.1

AT2G15540

non-LTR retrotransposon family

5.2

AT2G18220

Noc2p family

5.2

AT2G29350

senescence-associated gene 13

7.7

AT2G31040

Encodes an integral thylakoid protein that facilitates assembly of the membranous part of the chloroplast ATPase

9.6

AT2G47090

zinc ion binding/nucleic acid binding protein

12.4

AT3G10810

zinc finger (C3HC4-type RING finger) family protein

6.4

AT3G11280

Duplicated homeodomain-like superfamily protein

5.9

AT3G11900

aromatic and neutral transporter 1

7.1

AT3G12120

fatty acid desaturase 2

7.8

AT3G22160

JAV1 is a repressor of jasmonate-mediated defense responses

11.3

AT3G22170

far-red elongated hypocotyls 3

9.5

AT3G27503

Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR

10.6

AT3G30250

transposable element gene

8.0

AT3G33058

gypsy-like retrotransposon family

15.7

AT3G41768

rRNA

10.2

AT3G41979

5.8SrRNA

6.8

AT3G42130

glycine-rich protein

6.2

AT3G45755

transposable element gene

6.1

AT3G52140

tetratricopeptide repeat (TPR)-containing protein

6.2

AT4G10030

Alpha/beta hydrolase domain containing protein involved in lipid biosynthesis

5.3

AT4G20360

Nuclear transcribed, plastid localized EF-Tu translation elongation factor

5.2

AT4G32700

helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding

5.3

AT4G32810

carotenoid cleavage dioxygenase 8

5.2

AT4G34035

pre-tRNA tRNA-Arg

9.6

AT4G34040

RING/U-box superfamily protein

7.9

AT4G35090

catalase 2

5.2

AT4G39672

pre-tRNA

6.1

AT5G17420

Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues

30.1

AT5G17730

P-loop containing nucleoside triphosphate hydrolases superfamily protein

8.0

AT5G18650

CHY-type/CTCHY-type/RING-type Zinc finger protein

8.5

AT5G37960

GroES-like family protein

5.4

AT5G40690

histone-lysine N-methyltransferase trithorax-like protein

6.1

AT5G61710

cotton fiber protein

5.3

  1. The genes listed in this table are limited to those associated with peaks that were enriched greater than 5-fold and have been classified with a known function