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Table 1 Overview of data files/data sets

From: De novo genome assembly and analysis unveil biosynthetic and metabolic potentials of Pseudomonas fragi A13BB

Label Name of data file/data set File types (file extension) Data repository and identifier (DOI or accession number)
Data file 1 Composition of ultra-minimal substrate growth medium Portable Document Format file (.pdf) https://doi.org/10.6084/m9.figshare.12781193.v1 [7]
Data file 2 Quality distribution of Illumina reads Portable Network Graphic file (.png) https://doi.org/10.6084/m9.figshare.13490967.v1 [11]
Data file 3 Basic quality statistics of GridION sequencing data Portable Document Format file (.pdf) https://doi.org/10.6084/m9.figshare.13491147.v1 [13]
Data file 4 Average GridION read quality plot Portable Network Graphic file (.png) https://doi.org/10.6084/m9.figshare.13491210.v1 [14]
Data file 5 Quast report Portable Document Format file (.pdf) https://doi.org/10.6084/m9.figshare.13491228.v1 [17]
Data file 6 Short BUSCO summary Portable Document Format file (.pdf) https://doi.org/10.6084/m9.figshare.13491234.v1 [19]
Data file 7 Assembly graph Portable Network Graphic file (.png) https://doi.org/10.6084/m9.figshare.14370608.v1 [21]
Data file 8 Predicted Genomic Islands of P. fragi A13BB Portable Document Format file (.pdf) https://doi.org/10.6084/m9.figshare.13491300.v1 [30]
Data file 9 Metabolic pathways of interest in P. fragi A13BB and associated gene clusters Portable Document Format file (.pdf) https://doi.org/10.6084/m9.figshare.13507971.v1 [31]
Data set 1 Illumina and GridION sequencing reads Fastq file (.fastq.gz) https://identifiers.org/ncbi/insdc.sra:SRP251948 [37]
Data set 2 Genome assembly of P. fragi A13BB Fasta file (.fna) https://identifiers.org/insdc.gca:GCA_015767515.1 [38]