Table 3 SNPs significantly associated with the four plant architecture-related traits and 100-SW across multiple environments

PH

AX-90403529

1

56,192,858

2017DT/Mean/BLUP

3.65 ~ 4.2

16.02 ~ 17.32

AX-90343633

2

43,898,048

2017DT/BLUP

3.53 ~ 3.54

14.02 ~ 14.57

AX-90380587

5

2,724,763

2016JP/2017DT/BLUP

3.74 ~ 4.53

14.05 ~ 18.26

AX-90497935

5

2,820,291

2016JP/BLUP

3.53 ~ 3.76

13.3 ~ 14.98

AX-90498802

5

2,775,722

2017DT/Mean/BLUP

3.99 ~ 4.61

16.39 ~ 18.53

AX-90520578

5

2,727,221

2016JP/2017DT/BLUP

3.74 ~ 4.53

14.05 ~ 18.26

AX-90467414

11

1,375,175

2017DT/Mean/BLUP

3.59 ~ 3.99

13.66 ~ 16.41

AX-90406013

14

45,923,523

2017DT/Mean/BLUP

4.23 ~ 4.44

16.63 ~ 18.4

AX-90335719

15

47,490,299

2017DT/Mean/BLUP

3.52 ~ 4.08

12.5 ~ 15.48

Plant height 26–10

AX-90456181

18

57,800,102

2017DT/BLUP

3.53 ~ 3.57

13.31–14.67

AX-90403639

18

44,436,699

2016JP/Mean/BLUP

3.75 ~ 4.49

12.05 ~ 15.05

Plant height 26–14

AX-90466852

18

45,787,667

2016JP/Mean

3.53 ~ 4.56

11.19 ~ 19.21

NN

AX-90387160

7

42,526,322

2016JP/Mean/BLUP

3.81 ~ 4.56

15.1 ~ 19.21

AX-90435665

11

25,260,079

2017JP/Mean

3.5 ~ 3.81

14.92 ~ 15.2

AX-90436094

11

25,264,410

2017JP/Mean

3.5 ~ 3.81

14.92 ~ 15.2

AX-90427317

12

39,270,786

2017JP/Mean

3.7 ~ 3.8

15.2 ~ 15.55

AX-90361359

14

45,843,392

2016JP/Mean

3.79 ~ 4.58

15.1 ~ 18.57

AX-90453654

14

44,683,373

2016JP/Mean

3.9 ~ 4.56

15.57 ~ 18.48

AX-90377223

16

6,762,918

2016JP/Mean

3.79 ~ 4.59

15.12 ~ 18.6

AX-90451767

16

6,715,180

2016JP/Mean

3.79 ~ 4.61

15.12 ~ 18.71

AX-90475022

16

6,895,355

Mean/BLUP

3.54 ~ 3.91

13.27 ~ 15.61

AX-90507356

16

6,751,612

2016JP/Mean

3.77 ~ 4.63

15.02 ~ 18.79

AX-90317160

19

38,745,810

2016JP/2017DT/Mean/BLUP

3.55 ~ 4.4

13.35 ~ 17.8

AX-90352912

19

45,142,445

2016JP/Mean

4.03 ~ 4.19

16.16 ~ 16.84

BN

AX-90389449

6

7,767,192

Mean/BLUP

3.55 ~ 3.98

13.59 ~ 16.39

AX-90420194

6

15,358,000

2016JP/Mean

3.61 ~ 3.66

11.5 ~ 11.58

AX-90449770

6

48,360,017

2016JP/Mean/BLUP

3.58 ~ 3.66

10.71 ~ 11.51

AX-90345457

18

47,321,404

Mean/BLUP

4.29 ~ 4.45

16.47 ~ 18.18

DI

AX-90397877

8

3,019,730

Mean/BLUP

3.77 ~ 3.8

14.1 ~ 14.7

AX-90460927

10

44,361,012

2016JP/Mean

4.03 ~ 4.08

16.03

AX-90488930

18

308,829

2017JP/Mean

3.56 ~ 4.05

13.9 ~ 16.16

AX-90511176

18

328,596

2017JP/Mean

3.66 ~ 4.03

14.19 ~ 16.01

100-

SW

AX-90483564

3

36,787,728

Mean/BLUP

4.11 ~ 4.42

18.13 ~ 20.04

AX-90435834

4

1,402,717

2017JP/BLUP

3.8 ~ 3.96

14.38 ~ 15.51

Seed weight 2–1; Seed weight 47–3

AX-90520043

5

32,154,586

2017JP/2017DT/BLUP

4.87 ~ 5.14

20.42 ~ 21

Seed weight 36–9; Seed weight 37–12

AX-90370125

6

5,791,933

2017JP/2017DT/BLUP

3.88 ~ 4.91

15.34 ~ 19.78

Seed weight-008; Seed weight-011

100-

SW

AX-90305893

7

35,963,868

2017JP/2017DT/BLUP

4.2 ~ 4.42

16.47 ~ 16.81

AX-90428268

7

14,899,829

2017JP/2017DT/BLUP

3.52 ~ 3.75

10.97 ~ 11.67

AX-90328574

9

39,625,218

2017DT/BLUP

3.98 ~ 4.28

15.04 ~ 16.8

AX-90390639

10

4,423,355

2017JP/2017DT/BLUP

3.64 ~ 3.7

13.89 ~ 14.24

Seed weight 34–8

AX-90397611

10

4,455,671

2017JP/2017DT/BLUP

3.77 ~ 3.95

14.67 ~ 15.45

AX-90338196

10

4,366,228

2017JP/2017DT/BLUP

3.5 ~ 3.56

10.47 ~ 11.2

AX-90450721

10

4,397,396

2017JP/2017DT/BLUP

3.57 ~ 3.61

10.76 ~ 11.2

AX-90450778

10

4,426,008

2017JP/2017DT/BLUP

3.7 ~ 3.85

14.47 ~ 15.19

AX-90456677

10

4,365,393

2017JP/2017DT/BLUP

3.5 ~ 3.59

10.46 ~ 11.14

AX-90464016

10

4,376,046

2017JP/2017DT/BLUP

3.57 ~ 3.61

10.76 ~ 11.2

AX-90467603

10

4,363,693

2017JP/2017DT/BLUP

3.5 ~ 3.59

10.46 ~ 11.14

AX-90473871

10

4,426,717

2017JP/2017DT/BLUP

3.86 ~ 3.97

15.06 ~ 15.5

AX-90514209

10

1,523,443

2017JP/BLUP

3.52–3.54

13.27 ~ 13.62

AX-90462182

11

15,778,903

2017JP/2017DT/BLUP

4.38 ~ 4.58

15.2 ~ 15.48

Seed weight 36–11; Seed weight 4–1

AX-90463646

14

12,829,279

2017JP/2017DT/BLUP

4.28 ~ 4.51

17.43 ~ 18.23

AX-90481424

14

5,733,475

2017DT/BLUP

3.55 ~ 3.58

13.47 ~ 13.82

AX-90512978

14

45,661,649

2017JP/2017DT/BLUP

3.6 ~ 4.54

14.11 ~ 18.24

AX-90496773

16

1,617,227

2017DT/BLUP

4.27 ~ 4.48

16.25 ~ 17.77

AX-90519309

17

4,197,693

2017JP/2017DT/BLUP

3.86 ~ 4.64

15.23 ~ 19.32

AX-90336868

18

48,261,812

2017JP/2017DT/BLUP

3.62 ~ 4.0

14.04 ~ 15.44

AX-90369283

18

7,017,555

2017JP/2017DT/BLUP

4.37 ~ 4.82

17.49 ~ 18.8

Seed weight 50–4

AX-90350838

19

45,623,416

2017JP/2017DT/BLUP

4.29 ~ 4.41

17.68 ~ 18.24

AX-90460297

20

44,288,532

2017JP/2017DT/BLUP

4.31 ~ 4.6

16.93 ~ 17.58