Table 3 Average TPR, FDR and dQTL results. The TPR and FDR are measured with detection window sizes around the simulated QTL of ±5, 10 and 20 cM, or the whole chromosome (TPR chr). FDR chr is the average FDR on the chromosome with no simulated QTL. The results are presented per population size (N = 800 and N = 1600) and QTL genetic model (cross-specific, parental, ancestral, bi-allelic, and MQE)
| Â | N = 800 | N = 1600 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Genetic model | Cr. sp. | Par. | Anc. | Biall. | MQE | Cr. sp. | Par. | Anc. | Biall. | MQE |
TPR (%)(5cM) | 24 | 16 | 25 | 26 | 23 | 42 | 34 | 48 | 50 | 42 |
FDR (%)(5cM) | 45 | 47 | 35 | 32 | 40 | 42 | 41 | 26 | 24 | 33 |
TPR (%)(10cM) | 32 | 22 | 30 | 31 | 29 | 52 | 43 | 56 | 56 | 51 |
FDR (%)(10cM) | 28 | 28 | 21 | 19 | 24 | 28 | 24 | 14 | 13 | 20 |
TPR (%)(20cM) | 38 | 27 | 35 | 35 | 34 | 61 | 51 | 61 | 61 | 58 |
FDR (%)(20cM) | 12 | 11 | 8 | 7 | 10 | 13 | 10 | 6 | 5 | 9 |
TPR chr (%) | 41 | 30 | 37 | 37 | 37 | 66 | 56 | 64 | 63 | 62 |
FDR chr (%) | 0.3 | 0.9 | 0.2 | 0.6 | 0.5 | 1.7 | 0.9 | 0.1 | 0.6 | 0.7 |
dQTL (cM) | 7.1 | 8 | 6.1 | 5.3 | 7.1 | 6.5 | 6.8 | 4.3 | 3.9 | 5.4 |