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Table 1 Summary of SNPs from the 1000 Genomes Project data

From: On rare variants in principal component analysis of population stratification

 

Common SNP

Low-frequency SNP

Rare SNP

MAF

(0.4,0.5]

(0.3,0.4]

(0.2,0.3]

(0.1,0.2]

(0.01,0.1]

(0. 0001,0.01]

Pop (N)

Bin 1

Bin 2

Bin 3

Bin 4

Bin 5

Bin 6

EUR (503)

995,352

1,048,669

1,190,239

1,581,788

3,717,490

13,531,139

EAS (504)

970,359

1,010,549

1,130,961

1,440,178

2,982,582

14,189,976

AMR (347)

1,004,970

1,068,395

1,234,095

1,613,443

4,827,083

16,092,172

SAS (489)

1,001,330

1,077,620

1,239,727

1,626,183

3,989,855

15,562,799

AFR (661)

981,929

1,097,944

1,436,771

2,403,901

8,852,607

24,044,176

Total (2504)

1,023,570

1,105,365

1,308,728

1,824,157

6,770,457

65,247,586

  1. MAF minor allele frequency, Pop population, EUR European, EAS East Asian, AMR American, SAS South Asian, AFR African