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Table 1 Summary of SNPs from the 1000 Genomes Project data

From: On rare variants in principal component analysis of population stratification

  Common SNP Low-frequency SNP Rare SNP
MAF (0.4,0.5] (0.3,0.4] (0.2,0.3] (0.1,0.2] (0.01,0.1] (0. 0001,0.01]
Pop (N) Bin 1 Bin 2 Bin 3 Bin 4 Bin 5 Bin 6
EUR (503) 995,352 1,048,669 1,190,239 1,581,788 3,717,490 13,531,139
EAS (504) 970,359 1,010,549 1,130,961 1,440,178 2,982,582 14,189,976
AMR (347) 1,004,970 1,068,395 1,234,095 1,613,443 4,827,083 16,092,172
SAS (489) 1,001,330 1,077,620 1,239,727 1,626,183 3,989,855 15,562,799
AFR (661) 981,929 1,097,944 1,436,771 2,403,901 8,852,607 24,044,176
Total (2504) 1,023,570 1,105,365 1,308,728 1,824,157 6,770,457 65,247,586
  1. MAF minor allele frequency, Pop population, EUR European, EAS East Asian, AMR American, SAS South Asian, AFR African