The maternal origin of indigenous domestic chicken from the Middle East, the north and the horn of Africa

Al-Jumaili, Ahmed S.; Boudali, Selma Farah; Kebede, Adebabay; Al-Bayatti, Sahar A.; Essa, Abdulamir A.; Ahbara, Abulgasim; Aljumaah, Riyadh S.; Alatiyat, Raed M.; Mwacharo, Joram M.; Bjørnstad, Gro; Naqvi, Arifa N.; Gaouar, Semir Bechir Suheil; Hanotte, Olivier

doi:10.1186/s12863-020-0830-0

BMC Genomic Data

Table 1 Location, sample size and genetic diversity of the samples included in this study

From: The maternal origin of indigenous domestic chicken from the Middle East, the north and the horn of Africa

Country/population	N	S	H	Hd (SD)	π (SD)	K
Iraqi populations North-East
Sulimania [1]	9	0	1	0 (0)	0 (0)	0
Central
Baghdad	51	18	12	0.725 (0.053)	0.0080 (0.0009)	3.167
Karbala	12	5	4	0.712 (0.105)	0.0043 (0.0010)	1.697
Central [2]	63	20	14	0.736 (0.051)	0.0075 (0.0008)	2.988
South
Basra	11	1	2	0.182 (0.144)	0.0005 (0.0003)	0.182
Misan	24	11	5	0.438 (0.121)	0.0034 (0.0015)	1.359
South [3]	35	12	6	0.361 (0.103)	0.0025 (0.0011)	1.002
Total	107	22	18	0.686 (0.047)	0.0067 (0.0007)	2.652
Algerian populations North-West
Mascara	20	3	4	0.363 (0.131)	0.0010 (0.0004)	0.389
Oran	17	5	6	0.706 (0.106)	0.0022 (0.0005)	0.882
Tiaret	11	2	2	0.182 (0.144)	0.0009 (0.0007)	0.364
Tlemcen	18	15	8	0.797 (0.088)	0.0056 (0.0021)	2.242
North-West [1]	66	19	12	0.569 (0.072)	0.0025 (0.0007)	1.030
Central
Adrar [2]	22	5	4	0.654 (0.085)	0.0035 (0.0006)	1.403
Total	88	20	13	0.597 (0.060)	0.0028 (0.0006)	1.145
Ethiopian populations North
Mihquan	10	9	3	0.644 (0.101)	0.0054 (0.0031)	2.156
Meseret	10	11	6	0.867 (0.085)	0.0072 (0.0026)	2.844
North [1]	20	14	7	0.742 (0.071)	0.0061 (0.0021)	2.447
Central-East
Adane	10	11	5	0.800 (0.100)	0.0082 (0.0029)	3.244
Arabo	10	4	5	0.844 (0.080)	0.0033 (0.0006)	1.289
Horro	30	10	5	0.644 (0.081)	0.0068 (0.0017)	2.699
Jarso	14	0	1	0 (0)	0 (0)	0
Midir	10	2	3	0.600 (0.131)	0.0017 (0.0005)	0.667
Negasi_Amba	10	1	2	0.467 (0.132)	0.0012 (0.0003)	0.467
Central-East [2]	84	20	10	0.774 (0.027)	0.0092 (0.0010)	3.674
West
Ashuda	10	1	2	0.356 (0.159)	0.0009 (0.0004)	0.356
Amshi	10	1	2	0.533 (0.095)	0.0013 (0.0002)	0.533
Batambie	8	1	2	0.250 (0.180)	0.0006 (0.0004)	0.250
Dikuli	10	2	3	0.600 (0.131)	0.0017 (0.0005)	0.667
Gafera	10	1	2	0.467 (0.132)	0.0012 (0.0003)	0.467
Surta	9	1	2	0.222 (0.166)	0.0006 (0.0004)	0.222
Tzion_Teguaz	10	3	3	0.600 (0.131)	0.0024 (0.0009)	0.933
West [3]	67	5	8	0.707 (0.044)	0.0025 (0.0002)	1.000
South
Girissa	10	4	5	0.667 (0.163)	0.0027 (0.0008)	1.067
Kumato	10	10	5	0.756 (0.130)	0.0082 (0.0030)	3.244
Loya	10	8	5	0.756 (0.130)	0.0089 (0.0020)	3.533
Shubi_Gemo	10	14	6	0.911 (0.062)	0.0145 (0.0020)	5.756
South [4]	40	23	19	0.929 (0.021)	0.0150 (0.0006)	5.964
Total	211	33	36	0.840 (0.016)	0.0094 (0.0007)	3.732
Saudi Arabia
East [1]	45	18	15	0.856 (0.044)	0.0042 (0.0008)	1.697
Central [2]	43	20	11	0.631 (0.084)	0.0037 (0.0010)	1.499
West [3]	97	23	16	0.702 (0.041)	0.0041 (0.0006)	1.658
Total	185	34	26	0.727 (0.033)	0.0041 (0.0005)	1.633
Other populations
Libya	23	14	10	0.731 (0.099)	0.0054 (0.0018)	2.142
Pakistan	92	24	19	0.756 (0.043)	0.0088 (0.001)	3.503
Total
All the samples included in this study	706	55	88	0.815 (0.014)	0.0077 (0.0004)	3.058

N = number of samples, S = segregating sites, H = Number of haplotypes, Hd (SD) = haplotype diversity (standard deviation), π (SD) = nucleotide diversity (standard deviation) and K = average number of nucleotide differences

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