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Table 4 Number of significant variants identified at the chromosome significance level in a population of 483 Saanen and 629 Alpine individuals for both imputation scenarios

From: Genome wide association analysis on semen volume and milk yield using different strategies of imputation to whole genome sequence in French dairy goats

 

Alpine

Saanen

Imputation

Within-breed1

French goats2

Within-breed3

French goats4

 

sequence

50 k

sequence

50 k

sequence

50 k

sequence

50 k

milk yield

3

0

9

0

313

14

448

12

number of spermatozoa

0

0

1

0

5

1

51

1

semen concentration

2

0

2

0

2

0

8

0

semen volume

2

2

2

0

415

11

981

9

  1. Bonferroni thresholds: 1 p − value ≤ 1.22 ∗ 10−7 2 p − value ≤ 9.87 ∗ 10−8 3 p − value ≤ 1.17 ∗ 10−7 4 p − value ≤ 9.41 ∗ 10−8
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BMC Genomic Data

ISSN: 2730-6844

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