SNP marker | GGA | Position | Nearest gene | consequence type | SNP | Traits | Chicken populations | Reference |
---|---|---|---|---|---|---|---|---|
NC_006127.4: g24021190 G > A | Z | 24,021,190 | HMGCR | intron variant | G/A | EN at 300 days (P < 0.01) | F5 generation of Qing-Jiao-Ma breeding chickens | [20] |
rs16349546 | 4 | 1,874,976 | BMP15 | synonymous variant | C/T | AFE, EWFE, EW at 43 weeks, EP at 43 weeks, EP at 46 weeks and EP at 48 weeks (P < 0.05) | LaiWu Black chickens | [21] |
NC_006096.4: g22545152 G > C | 9 | 22,545,152 | RARRES1 | nonsynonymous variant | G/C | EPR from 169 day to 280 day of age(P < 0.01) | F2 resource population crossed by White Leghorn males and Rhode Island Red females | [9] |
rs16486559 | 5 | 30,579,826 | GREM1 | synonymous variant | G/A | EP at 43, 57, 66 weeks (P < 0.05) | Chinese Dagu chickens | [27] |
rs317328077 | 3 | 36,305,243 | GREM2 | synonymous variant | T/C | EP at 30, 57, 66 weeks (P < 0.05) | Chinese Dagu chickens | [27] |
rs14714701 | 7 | 20,960,237 | KCNH7 | intergenic variant | A/G | FEW (P < 0.01) | Jinghai Yellow Chicken | [19] |
rs14085822 | 3 | 12,329,322 | CDC42BPA | intron variant | A/G | EW at 300 days(P < 0.01) | Jinghai Yellow Chicken | [19] |
rs13905010 | 1 | 92,440,932 | GJA5 | intron variant | T/C | EN between the age of 300 and 462 days (P < 0.01) | Jinghai Yellow Chicken | [19] |
rs15602813 | 11 | 2,417,179 | CBFB | intron variant | T/C | EN between the age of 300 and 462 days (P < 0.01) | Jinghai Yellow Chicken | [19] |
rs14491030 | 4 | 76,458,342 | NCAPG | missense variant | A/G | EN between the age of 26 and 28 weeks (P < 0.01), EN between the age of 42 and 46 weeks (P < 0.01) | six generations of a purebred brown egg layer line | [30] |
rs14699480 | 4 | 76,411,761 | LCORL | intron variant | T/G | EN between the age of 26 and 28 weeks (P < 0.01) | six generations of a purebred brown egg layer line | [30] |
rs14652932 | 8 | 23,991,868 | FAF1 | intron variant | A/C | EN between the age of 26 and 28 weeks (P < 0.01) | six generations of a purebred brown egg layer line | [30] |
rs315420959 | 5 | 41,036,029 | 21 kb U SEL1L | intergenic variant | A/G | EN between the age of 21 and 40 weeks (P < 0.01) | F2 resource population made up of reciprocal crosses between White Leghorn and Dongxiang Blue-shelled chicken | [32] |
rs313187645 | 5 | 40,875,680 | GTF2A1 | intron variant | G/A | EN between 21 and 40 weeks of age(P < 0.01) | F2 resource population made up of reciprocal crosses between White Leghorn and Dongxiang Blue-shelled chicken | [32] |