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Table 3 D’ of LD for pairwise SSR loci each subpopulation

From: Mining of favorable alleles for seed reserve utilization efficiency in Oryza sativa by means of association mapping

Subpopulation

Number of significant LD locus pairs a

Number of significant LD locus pairs/Total number of locus pair (%) b

Frequency of D’ value (P < 0.01)

Mean of D’ c

0–0.2

0.2–0.4

0.41–0.6

0.61–0.8

0.81–1.0

POP1

1683

4.78

140

394

455

436

258

0.834

POP2

1350

3.83

115

231

306

315

397

0.705

POP3

1468

4.17

220

173

486

324

265

0.580

POP4

1599

4.54

128

329

507

212

423

0.679

POP5

1508

4.28

100

231

536

371

270

0.811

POP6

1103

3.13

112

182

293

236

190

0.741

  1. *a LD means linkage disequilibrium
  2. b Ratio between the number of significant LD locus pairs and total number of locus pairs
  3. c D′ means standardized disequilibrium coefficients