Table 3 List of QTLs detected for anaerobic germination potential in the BC1F2:3 mapping population of BJ1 and NSIC Rc222 significant at 1%level of significance
Trait | QTL | Chromosome | Locus name | Range | Position | A | LOD | R2 |
|---|---|---|---|---|---|---|---|---|
Screen house | ||||||||
SUR (14DAS) | qAG6–2 | 6 | RM190 | RM508-RM510 | 5.5 | 9.0 | 5.6 | 0.13 |
qAG7–4 | 7 | RM481 | RM481-RM21427 | 15.4 | 34.8 | 8.3 | 0.19 | |
qAG10–1 | 10 | RM258 | RM258-RM304 | 71.2 | 8.0 | 4.7 | 0.11 | |
SUR (21DAS) | qAG6–2 | 6 | RM190 | RM508-RM510 | 5.5 | 8.9 | 5.4 | 0.13 |
qAG7–4 | 7 | RM481 | RM481-RM21427 | 15.4 | 35.1 | 7.9 | 0.18 | |
qAG10–1 | 10 | RM304 | RM258-RM304 | 73.2 | 7.7 | 6.3 | 0.15 | |
Tray | ||||||||
SUR (14DAS) | qAG1–2 | 1 | RM490 | RM272-RM490 | 25.5 | 7.4 | 4.7 | 0.11 |
qAG6–2 | 6 | RM587 | RM508-RM510 | 9.5 | 8.8 | 7.0 | 0.16 | |
qAG10–1 | 10 | RM258 | RM258-RM304 | 71.2 | 8.4 | 5.0 | 0.12 | |
SUR (21DAS) | qAG1–2 | 1 | RM490 | RM272-RM490 | 25.5 | 9.0 | 5.3 | 0.13 |
qAG6–2 | 6 | RM587 | RM508-RM510 | 9.5 | 10.3 | 6.4 | 0.15 | |
qAG10–1 | 10 | RM258 | RM258-RM304 | 71.2 | 9.9 | 4.7 | 0.11 | |
Across environments | ||||||||
SUR (14DAS) | qAG1–2 | 1 | RM490 | RM272-RM490 | 25.5 | 4.7 | 5.0 | 0.12 |
qAG6–2 | 6 | RM587 | RM508-RM510 | 9.5 | 5.4 | 6.3 | 0.15 | |
qAG7–4 | 7 | RM481 | RM481-RM21427 | 13.4 | 10.3 | 6.0 | 0.14 | |
qAG10–1 | 10 | RM258 | RM258-RM304 | 71.2 | 5.9 | 5.6 | 0.13 | |
SUR (21DAS) | qAG1–2 | 1 | RM490 | RM272-RM490 | 25.5 | 5.2 | 5.4 | 0.13 |
qAG6–2 | 6 | RM587 | RM508-RM510 | 9.5 | 5.9 | 6.0 | 0.14 | |
qAG7–4 | 7 | RM481 | RM481-RM21427 | 13.4 | 10.5 | 5.5 | 0.13 | |
qAG10–1 | 10 | RM258 | RM258-RM304 | 71.2 | 6.9 | 6.2 | 0.15 | |