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Table 3 List of QTLs detected for anaerobic germination potential in the BC1F2:3 mapping population of BJ1 and NSIC Rc222 significant at 1%level of significance

From: Trait-based mapping to identify the genetic factors underlying anaerobic germination of rice: Phenotyping, GXE, and QTL mapping

TraitQTLChromosomeLocus nameRangePositionALODR2
Screen house
SUR (14DAS)qAG6–26RM190RM508-RM5105.59.05.60.13
qAG7–47RM481RM481-RM2142715.434.88.30.19
qAG10–110RM258RM258-RM30471.28.04.70.11
SUR (21DAS)qAG6–26RM190RM508-RM5105.58.95.40.13
qAG7–47RM481RM481-RM2142715.435.17.90.18
qAG10–110RM304RM258-RM30473.27.76.30.15
Tray
SUR (14DAS)qAG1–21RM490RM272-RM49025.57.44.70.11
qAG6–26RM587RM508-RM5109.58.87.00.16
qAG10–110RM258RM258-RM30471.28.45.00.12
SUR (21DAS)qAG1–21RM490RM272-RM49025.59.05.30.13
qAG6–26RM587RM508-RM5109.510.36.40.15
qAG10–110RM258RM258-RM30471.29.94.70.11
Across environments
SUR (14DAS)qAG1–21RM490RM272-RM49025.54.75.00.12
qAG6–26RM587RM508-RM5109.55.46.30.15
qAG7–47RM481RM481-RM2142713.410.36.00.14
qAG10–110RM258RM258-RM30471.25.95.60.13
SUR (21DAS)qAG1–21RM490RM272-RM49025.55.25.40.13
qAG6–26RM587RM508-RM5109.55.96.00.14
qAG7–47RM481RM481-RM2142713.410.55.50.13
qAG10–110RM258RM258-RM30471.26.96.20.15
  1. SUR seedling survival (%), DAS days after seeding, LOD logarithm of odds, R2 phenotypic variation explained, A additive effects of the peak marker