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Table 1 Sequencing and genomic variant statistics for breeds used in this study

From: Accumulation of genetic variants associated with immunity in the selective breeding of broilers

 Sequencing StatisticsSummary of SNPs Identified By Feature and Impact
Sequencing MethodTotal # of readsAligned ReadsUnmappedBreadth of coverageAverage read depthSynonymousNon-synonymousIntergenicIntronicUTR5UTR3Frameshift indelNon-frameshift indelStop gainStop loss
1957NextSeq954,402,120771,590,591178,041,95290%8963,57328,6972,733,4423,917,44350,831139,826299397320338
1978NextSeq956,913,758813,956,611124,470,40290%9170,41331,9302,953,4084,317,69857,084151,9673145101322550
Ross 308NextSeq753,170,974688,175,10920,392,93390%8370,20831,7912,933,9824,283,30456,713152,1513030100624547
SilkieIllumina GAII250,344,910183,908,0654,059,84091%1618,03551205,769,4361,141,875257125,457191111112
L2Illumina GAII319,254,874226,413,4414,765,90393%1918,13152065,804,9681,141,600282925,680226121142
CB1SOLiD302,271,430191,347,79099,593,87190%8844420852,009,820404,234646928613612161
CB2SOLiD225,049,549138,854,31978,806,79189%3494511711,270,404262,7833295916736330
HighSOLiD285,510,087186,711,97389,131,04686%4387410051,058,205218,9442454974676410
LowSOLiD311,562,452201,484,14798,719,56788%42419630706,923146,7401733255221810
ObeseSOLiD214,645,321127,085,83780,434,29489%6520313131,309,898267,7623955958807130
RIRSOLiD182,411,411111,322,05164,677,50989%53996989972,200196,3222574490464012
WLASOLiD311,017,596176,885,293101,265,63791%7733419591,972,780406,528650912814313041
WLBSOLiD179,401,459132,406,70239,517,06488%5564014651,562,666319,5253967104938610
RJFSOLiD176,071,566112,046,66857,045,80788%53098066,65712,52714324181500
RJFsweSOLiD355,473,025254,348,419131,460,56991%1010,67726882,544,261516,48190311,72917815971
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