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Table 1 Summary of raw reads after quality control and mapping to the reference genome

From: Pineal gland transcriptomic profiling reveals the differential regulation of lncRNA and mRNA related to prolificacy in STH sheep with two FecB genotypes

Sample name

Raw reads number

Clean reads number

Clean reads rate (%)

Mapped reads

Mapping rate (%)

Q30 (%)

MM_F_P_1

99,577,992

96,579,902

96.99

89,494,204

92.66

95.25

MM_F_P_2

98,042,002

95,083,618

96.98

88,326,891

92.89

95.38

MM_F_P_3

99,359,596

96,678,930

97.30

89,144,759

92.21

93.97

MM_L_P_1

94,117,268

90,374,994

96.02

80,877,361

89.49

91.91

MM_L_P_2

84,813,806

81,105,250

95.63

69,833,669

86.10

92.63

MM_L_P_3

81,967,646

78,592,818

95.88

71,911,716

91.50

93.18

ww_F_P_1

90,655,762

88,791,808

97.94

81,552,108

91.85

94.37

ww_F_P_2

98,121,998

95,381,100

97.21

85,822,614

89.98

94.40

ww_F_P_3

108,614,426

105,051,936

96.72

94,957,100

90.39

93.18

ww_L_P_1

99,462,864

95,491,444

96.01

87,266,138

91.39

93.35

ww_L_P_2

85,154,530

83,228,220

97.74

75,517,349

90.74

93.11

ww_L_P_3

102,394,760

99,115,258

96.80

90,525,511

91.33

93.19