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Table 2 List of selected primer pairs targeting putative B. aethiopum microsatellite loci and assessment of their polymorphism detection ability

From: Transferability, development of simple sequence repeat (SSR) markers and application to the analysis of genetic diversity and population structure of the African fan palm (Borassus aethiopum Mart.) in Benin

Locus name

Repeat motif

Primer sequences (5′-3′ orientation)

Expected amplicon size (bp)

Amplification product

MBo01

[AGG]7

CCTATCCTTCCATCCCGATCG

90

complex, polymorphic

TTGCCGTGAATCAGCCTCAA

MBo02

[ATC]7

GGGAGAACAAGGATAACAGCAG

115

single locus, monomorphic

TCCATTTCATCACTAGCTCGGT

MBo03

[AGG]7

CTCCGAGCCCTAGCAACTTT

131

single locus, monomorphic

TCTGGATGACGAAACCTTCACA

MBo04

[ACC]7

GATGTGGCCGCTCTGATCTC

192

single locus, monomorphic

ACATGCTGGCAAGGTATTCT

MBo05

[AAG]7

GTCCTAGCACGCTGGCATTA

202

single locus, monomorphic

TGGGTTGCCAATGAACCCTT

MBo06

[ATC]7

TGGCCATTCAACTGCTTCAC

202

single locus, monomorphic

GAATCTAGCACCAGCAAACCC

MBo07

[AAG]7

GGCACTGGAGTCCACATCAA

239

single locus, monomorphic

TCCTTCTGTACTGGCATCTCT

MBo08

[AGG]8

TGATTGTTTCCTCTTCCCTCCT

90

single locus, monomorphic

TTAATGAGCCGAAGAGGAGCC

MBo09

[AGG]8

TCCCTCACTCCCATCCTCTC

163

single locus, monomorphic

ACTCCACTCCTTCCCTCATACA

MBo10

[AAC]8

GTTAAAGACGCAGGGCTGGA

166

single locus, monomorphic

CCCACTTAGTGAGATAAGACTTGA

MBo11

[ATC]8

GCATCACATGGTTTCAGGCT

219

single locus, monomorphic

GCTCAACCATCGGCAGTGTA

MBo12

[ATC]9

GGAGGAAAGGTTGCCCTAGAA

102

single locus, monomorphic

TCTCAACCTGATGTCATTGCA

MBo13

[AAG]9

CAGGTTGCATCGGCCCATT

103

complex, polymorphic

GGAGCCTAATGCACCCAGAG

MBo14

[AAC]9

ATGGCCGATCCCACTTAGTG

117

single locus, monomorphic

GAGAGAACGGCAATAATTTATGCA

MBo15

[AAG]10

GCTGAAGAGGATGAAGAAGAAGC

92

complex, monomorphic

TCATCATCTCCCTCTCCTTCT

MBo16

[AGG]10

CAGCACTGGCCTCACAGC

118

single locus, monomorphic

CCGTCGATCAGTTGTTGGAGA

MBo17

[ATC]10

ACACAATGACCTTTCGCTGA

124

single locus, monomorphic

CCAAACAGGACCTTATGCCA

MBo18

[AAG]10

ACATCCTCTCCTTCATCTCCTT

187

complex, polymorphic

GTTCCTACAATGCTTGGCGC

MBo19

[AAG]10

TGCTATCACCCAATATCTAGGCT

202

single locus, monomorphic

ACAGTCAACAACTACCATACTGC

MBo20

[AAG]10

TGTGGTTAAAGCAATGGAAGCA

229

single locus, monomorphic

GCCGAACTCCTACTCTCATACG

MBo21

[AAG]11

ACAACAGAAGATCAGTATACGTTCT

171

single locus, monomorphic

TTGAGGAATCATGCTTGTCAGT

MBo22

[AAG]14

AGAAGAATTCGGTTAGGTCACAA

108

single locus, monomorphic

AGATAACATGGGTAAGAATTGCCT

MBo23

[AAT]5

TGAGTTCTTGTCTTGTCTTCGT

100

single locus, monomorphic

GGTTTGGGACACCCTTCAGG

MBo24

[AAT]9

AAAGTCATGTCTGGGTGATGAA

90

single locus, monomorphic

ATGATGAGCACAGCTACAACTCT

MBo25

[AAT]6

TCTTCAGGTGACAAGCAACA

96

single locus, monomorphic

CCTGGGCATGGAGATAGCAT

MBo26

[AAT]7

CCATAGGCCAGCCCACTATA

134

single locus, monomorphic

ACCCTTTCTTCTTCCTCATTTGT

MBo27

[AAT]7

TCTCTATTGCTTGGTGATCCC

103

single locus, monomorphic

TCCAACAAGGGATGGTTATCATG

MBo28

[AAT]8

GCCTTGAGAGTGGAAGAGGC

205

single locus, monomorphic

TCTCTTCTTTGCGCCCTCAT

MBo29

[AAT]16

AGACATGTAGAGGTGGGACT

211

single locus, monomorphic

TCTGTATGAGAGACGTGTTACAGT

MBo30

[AAT]8

TGACCATAACAAGCTACCAGGT

146

single locus, monomorphic

GGTGGAAGCTATTGATATTGCATGT

MBo31

[AAT]10

TGACAATGATGCATGCGATAACA

187

single locus, monomorphic

GCATCACCCATGTCCTTTAGC

MBo32

[AAT]10

TCCGAGGGCAGTATTTGTCG

117

single locus, monomorphic

CACTATTTCGGAAACCTAAGCCC

MBo33

[AAT]17

GCACACTTTGTATCCGACGC

147

single locus, monomorphic

CAGGGATAGTAACCGTCAGGG

MBo34*

[AG]28

GTGGCACCTCTGCGGTTT

192

single locus, polymorphic

CGAGATGGAAGCACCTGGAG

MBo35*

[AG]24

AGCATGCTTTCTGCTTCATGTG

137

single locus, polymorphic

CCTTTCCCTGACTGCATTGC

MBo36

[AG]23

TCGGAAGTCGAATGTGGCAG

180

no amplification

TCGGAAGAGTGGTCAATCATGG

MBo37

[AG]23

GCTCTACTCCCAGAGACGGA

142

complex, polymorphic

AACAGTCGACGGAATGCTCA

MBo38*

[AG]20

AGTCCTCACTGCTGGTGGTA

130

single locus, polymorphic

TCCTTGAATAGTCCATCTTGCA

MBo39

[AG]19

AACGCAGGTTAAGAGGCTCC

168

complex, monomorphic

CCTCCTGGTGCAACCCTTAC

MBo40

[AG]19

TGTGGAGTGTGAGTCGATGG

193

complex, polymorphic

GGCTGCATAATCTCATCACGC

MBo41*

[AG]18

TTCTCCACCAGCCTCACAAC

184

single locus, polymorphic

ATACGGCCCATCAACCCTTC

MBo42

[AG]18

CCTGGTGGTACATGTGGTCA

136

complex, polymorphic

TGTGGCACATTCATTTCTGAAGG

MBo43

[AG]18

AGTTTGTTCTGTGTGTTGTCAC

137

no amplification

GCACACATCTTGCTTTGAAGAC

MBo44

[AG]17

AACACACTTTAAATCGACTTCTTCA

193

complex, polymorphic

CACGGCTGCCATGTGAGG

MBo45

[AG]17

TAGATCGGAAGTCAGGCCC

193

no amplification

AGAGAAGTGGGAGGAGAGGTC

MBo46

[AG]17

GCCGATATTAGCTTCTTCTTGGC

154

single locus, monomorphic

GCCTTGTTGATCCCGTTTCAC

MBo47

[AG]16

GGCACCTGACGCCTCTTT

188

single locus, monomorphic

TCACTTCGACTCAATTGTATCCAT

MBo48

[AG]16

AGGACAAAGAGATGAGAAGCCT

92

complex, polymorphic

ACCAATTCCCAGTTAGTTGACCA

MBo49*

[AG]16

CATCACCCATTCTCTCTGCCT

141

single locus, polymorphic

GAGAAACCATCCGCACCTCA

MBo50*

[AG]15

AGAAGTCATCTTGAGGGCCC

150

single locus, polymorphic

TTGCTAGAATGATACACAAATTGCT

MBo51*

[AG]15

TGTGCTATTTGTTGGGAATGCA

191

single locus, polymorphic

GCAAGCTCATGTTCTAGTTTCAAGT

MBo52*

[AG]15

ACACATCCTACATGAATAGACCTCC

122

single locus, polymorphic

TCTTGTCATAGCCTAGATTCCCT

MBo53

[AG]15

AGGTTTAAGGGTTTGGGTTAGGG

131

single locus, monomorphic

GGTGGAGTAAGTTTGAGGGTCA

MBo54*

[AG]11NNN[AG]15

CATATGCTGATACAAGAGAGAGGG

124

single locus, polymorphic

ACCTTATAAGCAGGATCCAGACA

MBo55

[AG]15

TGGAATCAACCTTGGGTCTACA

198

complex, polymorphic

TCGTCGGTCTTCTAGCCACT

MBo56*

[AG]15

ACCAAGATCAAGCACGAGGA

103

single locus, polymorphic

AGGATCACCCTTTCTTTCTTTCT

MBo57*

[AG]15

GGGTTCAATCCTGATGAGAGCA

136

single locus, polymorphic

ACCGTTCGATCAACCATGGT

  1. Loci for which single-locus SSR polymorphism has been detected within our test panel of seven B. aethiopum individuals are signaled by an asterisk (*)
  2. Conventionally, microsatellite motifs are displayed under the form [N1N2]x or [N1N2N3]x for dinucleotide and trinucleotide loci, respectively, where N1, N2 and N3 represent nucleotides included in the elementary unit of the motif and x is the number of unit repetitions. Expected amplicon size is as predicted by QDD