Table 4 The candidate or nearest genes to the most significant single nucleotide polymorphisms (SNPs) in significant regions based on 5 × 10− 8 for predicted methane emission (PME) per kg milk and fat traits
Trait | SNP name | SNP position | Ensembl gene ID | Gene start | Gene end | Gene name |
|---|---|---|---|---|---|---|
Methane per kg fat | 4:115131249 | 115131249 | ENSBTAG00000046461 | 114631249 | 115631249 | SUMF1a |
| Â | Â | ENSBTAG00000014372 | 114680160 | 114615444 | SMARCD3 | |
| Â | Â | ENSBTAG00000004540 | 114725191 | 114689767 | NUB1 | |
| Â | Â | ENSBTAG00000006232 | 114755250 | 114730382 | WDR86 | |
| Â | Â | ENSBTAG00000003019 | 114779653 | 114773449 | CRYGN | |
| Â | Â | ENSBTAG00000031861 | 114855282 | 114803157 | RHEB | |
| Â | Â | ENSBTAG00000002917 | 114925565 | 114885501 | PRKAG2 | |
| Â | Â | ENSBTAG00000045535 | 115301688 | 115246102 | GALNTL5 | |
| Â | Â | ENSBTAG00000021260 | 115360689 | 115335971 | GALNT11 | |
| Â | Â | ENSBTAG00000024199 | 115524670 | 115368063 | KMT2C | |
| Â | Â | ENSBTAG00000014871 | 115631329 | 115629803 | CCT8L2 | |
13:81673732 | 81673732 | ENSBTAG00000007917 | 81601021 | 81604089 | TSHZ2 | |
| Â | Â | ENSBTAG00000030556 | 81854047 | 81863004 | ZNF217 | |
| Â | Â | ENSBTAG00000000835 | 82162091 | 82259990 | BCAS1 | |
19:24494923 | 24494923 | ENSBTAG00000008324 | 24481721 | 24480297 | LOC618593 | |
| Â | Â | ENSBTAG00000017440 | 24023406 | 23961074 | METTL16 | |
| Â | Â | ENSBTAG00000016806 | 24158415 | 24088805 | PAFAH1B1 | |
| Â | Â | ENSBTAG00000011786 | 24181331 | 24168990 | CLUH | |
| Â | Â | ENSBTAG00000020000 | 24452796 | 24395974 | RAP1GAP2 | |
| Â | Â | ENSBTAG00000039018 | 24507032 | 24506058 | OR1G1 | |
| Â | Â | ENSBTAG00000040362 | 24521504 | 24520572 | LOC540082 | |
| Â | Â | ENSBTAG00000039411 | 24528384 | 24527446 | LOC532238 | |
| Â | Â | ENSBTAG00000039633 | 24539905 | 24538976 | LOC522582 | |
| Â | Â | ENSBTAG00000048282 | 24599226 | 24598261 | LOC509525 | |
| Â | Â | ENSBTAG00000048099 | 24613735 | 24612770 | LOC509526 | |
| Â | Â | ENSBTAG00000047049 | 24632514 | 24631549 | LOC617122 | |
| Â | Â | ENSBTAG00000026859 | 24655261 | 24654314 | LOC508980 | |
| Â | Â | ENSBTAG00000018221 | 24669376 | 24668411 | LOC101902679 | |
| Â | Â | ENSBTAG00000046652 | 24677969 | 24677022 | LOC538966 | |
| Â | Â | ENSBTAG00000037529 | 24708485 | 24707451 | OR3A2a | |
| Â | Â | ENSBTAG00000038059 | 24712313 | 24711369 | OR1E1 | |
| Â | Â | ENSBTAG00000046960 | 24724257 | 24723313 | LOC615901 | |
| Â | Â | ENSBTAG00000045667 | 24731754 | 24730810 | LOC618124 | |
| Â | Â | ENSBTAG00000046217 | 24750164 | 24749223 | LOC511509 | |
| Â | Â | ENSBTAG00000047458 | 24756645 | 24755704 | LOC618112 | |
| Â | Â | ENSBTAG00000045899 | 24763240 | 24762296 | LOC526294 | |
| Â | Â | ENSBTAG00000032457 | 24802537 | 24801593 | OR3A3a | |
| Â | Â | ENSBTAG00000015763 | 24824295 | 24809409 | SPATA22 | |
| Â | Â | ENSBTAG00000003629 | 24847108 | 24825866 | ASPA | |
| Â | Â | ENSBTAG00000000020 | 24885437 | 24854533 | TRPV3 | |
| Â | Â | ENSBTAG00000018880 | 24913053 | 24890751 | TRPV1 | |
| Â | Â | ENSBTAG00000000829 | 24951464 | 24933750 | SHPK | |
| Â | Â | ENSBTAG00000000831 | 24972141 | 24951988 | CTNS | |
| Â | Â | ENSBTAG00000000833 | 24977062 | 24971932 | TAX1BP3 | |
| Â | Â | ENSBTAG00000025121 | 24978133 | 24977284 | EMC6 | |
| Â | Â | ENSBTAG00000015258 | 24996301 | 24983919 | P2RX5 | |
28:21771233 | 21771233 | ENSBTAG00000036111 | 21868711 | 21867759 | AP2M1 | |
PME per kg milk | 15:25797132 | 25797132 | ENSBTAG00000005843 | 25304051 | 25293299 | REXO2 |
| Â | Â | ENSBTAG00000005945 | 25434051 | 25419219 | NXPE4 | |
| Â | Â | ENSBTAG00000031362 | 25524857 | 25515542 | NXPE2 | |
| Â | Â | ENSBTAG00000000977 | 26451509 | 26101411 | CADM1 |