Genome-wide association studies for methane emission and ruminal volatile fatty acids using Holstein cattle sequence data

Table 3 The candidate or nearest genes to the most significant single nucleotide polymorphisms (SNPs) in significant regions based on 5 × 10⁻⁸ threshold for valeric acid trait

SNP name	SNP position	Ensembl gene ID	Gene start	Gene end	Gene name
5:16795260	16795260	ENSBTAG00000046197	16534698	16534778	MGAT4C^a
		ENSBTAG00000020784	17207296	17208334	PTGR2^a
25:37967076	37967076	ENSBTAG00000040568	37431139	37469998	ZNF789^a
		ENSBTAG00000020440	37513721	37524164	LOC101910000
		ENSBTAG00000002090	37500102	37512370	CPSF4
		ENSBTAG00000020439	37524461	37532400	BUD31
		ENSBTAG00000044040	37532740	37544696	PDAP1
		ENSBTAG00000046248	37546485	37559078	ARPC1B
		ENSBTAG00000004242	37564390	37587556	ARPC1A
		ENSBTAG00000015737	37664542	37691692	KPNA7
		ENSBTAG00000007118	37777779	37801407	SMURF1
		ENSBTAG00000007113	37807383	37895047	TRRAP
		ENSBTAG00000005679	37902689	37918783	TMEM130
		ENSBTAG00000045896	38041960	38053172	NPTX2
		ENSBTAG00000019181	38227396	38280018	BAIAP2L1
		ENSBTAG00000022825	38281392	38287463	BRI3
		ENSBTAG00000046010	38342493	38343056	BHLHA15
		ENSBTAG00000004135	38348134	38395453	LMTK2

^aunknown genes in cow, the names in the table are their orthologues in other species

ISSN: 2730-6844