Skip to main content

Table 4 List of candidate genes for QTLs identified in specific seeding density

From: Genetic analysis of rice seedling traits related to machine transplanting under different seeding densities

QTLs

Chromosome

MSU locus ID

Gene annotation

Reference

qRDW1.1

1

LOC_Os01g13520

OsARF16, auxin response factor 1-like

[55, 56]

 

1

LOC_Os01g13530

ABIL3, Abl interactor-like protein 3, expressed

[57]

 

1

LOC_Os01g13540

NLP3, Nodule inception protein-like protein 3

[58]

 

1

LOC_Os01g13570

Coding for phosphoglycerate mutase, expressed

[59]

 

1

LOC_Os01g13740

OsGLK2, probable transcription factor GLK2

[60]

qFLL2.1

2

LOC_Os02g14910

OsbZIP19, putative bZIP transcription factor RF2b

[61]

 

2

LOC_Os02g15580

OsCNGC1, Cyclic nucleotide-gated channels family, Group I

[62]

 

2

LOC_Os02g15640

Abscisic acid receptor PYL3, PYR1-like protein 3

[63]

qFLSL5.1

5

LOC_Os05g28350

OsABI4, Ethylene-responsive transcription factor ABI4

[64]

 

5

LOC_Os05g28500

Pentatricopeptide-repeat proteins (PPRs)

[65]

 

5

LOC_Os05g28730

Zinc finger, C3HC4 type domain containing protein

[66]

 

5

LOC_Os05g28740

Universal stress protein domain-containing protein, putative

[67]