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Table 3 Results from models looking for family effects with genotype. Fixed effects with a p value > 0.2 are not shown for clarity, nor lower order fixed effects that are involved in an interaction with a p value < 0.05

From: Development of supermale and all-male Atlantic salmon to research the vgll3 allele - puberty link

Comparison Parameter Model R2m R2c Highest order of significance χ2 df p
EE vs EL Jacking GLM (binomial) Genotype + dam + sire 0.39 Genotype 19.0 1 < 0.001 ***
      Sire 38.7 1 < 0.001 ***
GSI in pubertal fish LME Genotype × dam × sire 0.44 0.44 Genotype × Sire 4.3 1 0.039 *
      Genotype × Dam 2.4 1 0.123  
      Dam × Sire 9.7 1 0.002 **
Body mass - day 0 LME (log) Genotype × dam × sire 0.09 0.09 Dam × Sire 10.5 1 0.001 **
      Genotype × Dam 5.2 1 0.022 *
Body condition - day 0 LME (log) Genotype × dam × sire 0.20 0.28 Dam 63.0 1 < 0.001 ***
      Sire 7.7 1 0.005 **
      Dam × Sire 2.7 1 0.098  
EL vs LL Jacking GLMER (binomial) Genotype × dam × sire 0.15 0.16 Dam 9.2 1 0.002 **
      Sire 6.0 1 0.014 *
GSI in pubertal fish LME Genotype × dam × sire 0.77 0.79 Genotype × Dam × Sire 5.1 1 0.024 *
Body mass - day 0 LME Genotype × dam × sire 0.03 0.03 Dam 6.5 1 0.011 *
      Sire 2.9 1 0.086  
Body condition - day 0 LME Genotype × dam × sire 0.06 0.07 Dam × Sire 10.9 1 < 0.001 ***
EL Jacking GLM (binomial) Dam + sire 0.42 Dam 183.6 3 < 0.001 ***
      Sire 44.1 1 < 0.001 ***
GSI in pubertal fish LME Dam × sire 0.39 0.39 Dam × sire 16.8 3 < 0.001 ***
Body mass (g) - day 0 LME (log) Dam × sire 0.19 0.21 Dam × sire 11.3 3 0.010 *
Body condition (K factor) - day 0 LME Dam × sire 0.19 0.21 Dam × sire 12.9 3 0.005 **
  1. *** p < 0.001, ** p < 0.01, * p < 0.05