Development of supermale and all-male Atlantic salmon to research the vgll3 allele - puberty link

BMC Genomic Data

Table 3 Results from models looking for family effects with genotype. Fixed effects with a p value > 0.2 are not shown for clarity, nor lower order fixed effects that are involved in an interaction with a p value < 0.05

Comparison	Parameter	Model		R^2m	R^2c	Highest order of significance	χ²	df	p
EE vs EL	Jacking	GLM (binomial)	Genotype + dam + sire	0.39	–	Genotype	19.0	1	< 0.001	***
						Sire	38.7	1	< 0.001	***
	GSI in pubertal fish	LME	Genotype × dam × sire	0.44	0.44	Genotype × Sire	4.3	1	0.039	*
						Genotype × Dam	2.4	1	0.123
						Dam × Sire	9.7	1	0.002	**
	Body mass - day 0	LME (log)	Genotype × dam × sire	0.09	0.09	Dam × Sire	10.5	1	0.001	**
						Genotype × Dam	5.2	1	0.022	*
	Body condition - day 0	LME (log)	Genotype × dam × sire	0.20	0.28	Dam	63.0	1	< 0.001	***
						Sire	7.7	1	0.005	**
						Dam × Sire	2.7	1	0.098
EL vs LL	Jacking	GLMER (binomial)	Genotype × dam × sire	0.15	0.16	Dam	9.2	1	0.002	**
						Sire	6.0	1	0.014	*
	GSI in pubertal fish	LME	Genotype × dam × sire	0.77	0.79	Genotype × Dam × Sire	5.1	1	0.024	*
	Body mass - day 0	LME	Genotype × dam × sire	0.03	0.03	Dam	6.5	1	0.011	*
						Sire	2.9	1	0.086
	Body condition - day 0	LME	Genotype × dam × sire	0.06	0.07	Dam × Sire	10.9	1	< 0.001	***
EL	Jacking	GLM (binomial)	Dam + sire	0.42	–	Dam	183.6	3	< 0.001	***
						Sire	44.1	1	< 0.001	***
	GSI in pubertal fish	LME	Dam × sire	0.39	0.39	Dam × sire	16.8	3	< 0.001	***
	Body mass (g) - day 0	LME (log)	Dam × sire	0.19	0.21	Dam × sire	11.3	3	0.010	*
	Body condition (K factor) - day 0	LME	Dam × sire	0.19	0.21	Dam × sire	12.9	3	0.005	**

ISSN: 2730-6844