Table 1 RNA-seq data quality of nine sample from ‘Brazilian’ root
Sample | Clean reads | Error (%) | Q20 | Q30 | Mapping ratio (%) |
|---|---|---|---|---|---|
CK-1 | 30,280,201 | 0.03 | 95.86 | 89.83 | 83.95 |
CK-2 | 35,928,007 | 0.03 | 98.04 | 94.26 | 85.68 |
CK-3 | 24,303,189 | 0.02 | 98.20 | 94.64 | 87.44 |
Foc1-1 | 25,554,553 | 0.02 | 98.06 | 94.27 | 87.90 |
Foc1-2 | 27,270,399 | 0.03 | 98.00 | 94.19 | 87.71 |
Foc1-3 | 23,217,046 | 0.03 | 97.50 | 92.94 | 84.36 |
Foc4-1 | 25,811,916 | 0.02 | 98.05 | 94.29 | 87.33 |
Foc4-2 | 31,028,764 | 0.02 | 98.24 | 94.79 | 86.16 |
Foc4-3 | 22,743,669 | 0.03 | 95.83 | 89.76 | 83.74 |